miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41321_ptc-MIR164f:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 4e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60

                                        
Query: 61 ttgcatgtgctctatctctccagcttggac 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 ttgcatgtgctctatctctccagcttggac 90




>41093_tcc-MIR164c:mirbase
          Length = 112

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 3  agccatgctggagaagcagggcacatgctaaa 34
          ||||||||||||||||||||||||||||||||
Sbjct: 13 agccatgctggagaagcagggcacatgctaaa 44




>40346_rco-MIR164d:mirbase
          Length = 85

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 6  catgctggagaagcagggcacatgctaaatctatcag 42
          ||||||||||||||||||||||||||| || ||||||
Sbjct: 1  catgctggagaagcagggcacatgctagatttatcag 37




>41580_vvi-MIR164b:mirbase
          Length = 93

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 5  ccatgctggagaagcagggcacatgct 31
          |||||||||||||||||||||||||||
Sbjct: 5  ccatgctggagaagcagggcacatgct 31




>41934_osa-MIR164d:mirbase
          Length = 94

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 3  agccatgctggagaagcagggcacatgct 31
          |||||||||||||||| || |||||||||
Sbjct: 92 agccatgctggagaaggagcgcacatgct 64



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 8  tgctggagaagcagggcacatgct 31
          ||||||||||||||||||| ||||
Sbjct: 8  tgctggagaagcagggcacgtgct 31




>41739_bdi-MIR164c:mirbase
          Length = 138

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 3   agccatgctggagaagcagggcacatgct 31
           |||||||||||||||| || |||||||||
Sbjct: 109 agccatgctggagaaggagcgcacatgct 81



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 8  tgctggagaagcagggcacatgct 31
          ||||||||||||||||||| ||||
Sbjct: 31 tgctggagaagcagggcacgtgct 54




>41316_ptc-MIR164a:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 8  tgctggagaagcagggcacatgctaaatc 36
          ||||||||||||||||||| ||| |||||
Sbjct: 8  tgctggagaagcagggcacgtgcaaaatc 36




>40667_mtr-MIR164d:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacatgct 31
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacatgct 26




>42504_sbi-MIR164b:mirbase
          Length = 111

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 8  tgctggagaagcagggcacatgct 31
          ||||||||||||||||||| ||||
Sbjct: 18 tgctggagaagcagggcacgtgct 41




>41319_ptc-MIR164d:mirbase
          Length = 99

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 9  gctggagaagcagggcacatgctaaatc 36
          |||||||||||||||||| ||| |||||
Sbjct: 9  gctggagaagcagggcacgtgcaaaatc 36