miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41345_ptc-MIR167g:mirbase
          Length = 86

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60

                                    
Query: 61 gatcatgtggcagtttcacctgaagt 86
          ||||||||||||||||||||||||||
Sbjct: 61 gatcatgtggcagtttcacctgaagt 86




>41344_ptc-MIR167f:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 8e-29
 Identities = 77/81 (95%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaag-aacag 61
          |||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||
Sbjct: 3  ctatcagttgaagctgccagcatgatcttagccttcctcctttgttgaggaaagaaacag 62

                               
Query: 62 atcatgtggcagtttcacctg 82
          |||||||||||||||||||||
Sbjct: 63 atcatgtggcagtttcacctg 83




>40445_gma-MIR167e:mirbase
          Length = 109

 Score =  105 bits (53), Expect = 5e-24
 Identities = 74/81 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60
          ||||| |||||||||||||||||||||||||||| ||||||  ||| || ||||||| ||
Sbjct: 9  cactaccagttgaagctgccagcatgatcttaacttccctcacttgccgtggaaagatca 68

                               
Query: 61 gatcatgtggcagtttcacct 81
          |||||||||||||||||||||
Sbjct: 69 gatcatgtggcagtttcacct 89




>40446_gma-MIR167f:mirbase
          Length = 109

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60
          ||||| |||||||||||||||||||||||||||| ||||||  |||  | ||||||| ||
Sbjct: 9  cactaccagttgaagctgccagcatgatcttaacttccctcacttgctgtggaaagatca 68

                               
Query: 61 gatcatgtggcagtttcacct 81
          |||||||||||||||||||||
Sbjct: 69 gatcatgtggcagtttcacct 89




>41228_csi-MIR167b:mirbase
          Length = 123

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 77/84 (91%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactatcagttgaagctgccagcatgatcttaacctccctcctttg-tcgaggaaaga-a 58
          ||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| || |
Sbjct: 10 cactatcagatgaagctgccagcatgatcttaactttcctcctttgctcgaggaatgata 69

                                  
Query: 59 cagatcatgtggcagtttcacctg 82
          ||||||||| ||||||||||||||
Sbjct: 70 cagatcatgcggcagtttcacctg 93




>40353_rco-MIR167b:mirbase
          Length = 80

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                      
Query: 6  tcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaacagatca 65
          ||||||||||||||||||||||||| || || ||||| | || ||||| ||| |||||||
Sbjct: 1  tcagttgaagctgccagcatgatctaaatcttcctccctcgttgaggagagatcagatca 60

                         
Query: 66 tgtggcagtttcacc 80
          |||||||||||||||
Sbjct: 61 tgtggcagtttcacc 75




>41100_tcc-MIR167c:mirbase
          Length = 112

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 70/80 (87%), Gaps = 2/80 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  atcagttgaagctgccagcatgatcttaacctccctcc--tttgtcgaggaaagaacaga 62
          |||||||||||||||||||||||||||||  | ||| |  ||| || |||||||| ||||
Sbjct: 15 atcagttgaagctgccagcatgatcttaattttccttctttttatcaaggaaagatcaga 74

                              
Query: 63 tcatgtggcagtttcacctg 82
          |||| |||||||||||||||
Sbjct: 75 tcatatggcagtttcacctg 94




>41595_vvi-MIR167e:mirbase
          Length = 90

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 73/83 (87%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactatcagttgaagctgccagcatgatcttaacctccct-cctttgtcgaggaaagaac 59
          |||||||||||||||||||||||||||||| ||| | | | ||||||| ||  | ||| |
Sbjct: 1  cactatcagttgaagctgccagcatgatctaaacttgcttccctttgt-gaacagagatc 59

                                 
Query: 60 agatcatgtggcagtttcacctg 82
          |||||||||||||||||||||||
Sbjct: 60 agatcatgtggcagtttcacctg 82




>40401_ahy-MIR167:mirbase
          Length = 118

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 8  agttgaagctgccagcatgatcttaac 34
          |||||||||||||||||||||||||||
Sbjct: 18 agttgaagctgccagcatgatcttaac 44



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 cagatcatgtggcagtttcacct 81
          |||||||||||||||||||||||
Sbjct: 77 cagatcatgtggcagtttcacct 99




>40400_ahy-MIR167:mirbase
          Length = 118

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 8  agttgaagctgccagcatgatcttaac 34
          |||||||||||||||||||||||||||
Sbjct: 18 agttgaagctgccagcatgatcttaac 44



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 cagatcatgtggcagtttcacct 81
          |||||||||||||||||||||||
Sbjct: 77 cagatcatgtggcagtttcacct 99




>41593_vvi-MIR167c:mirbase
          Length = 91

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 7  cagttgaagctgccagcatgatcttaacctccct 40
          |||||||||||||||||||||||| ||| |||||
Sbjct: 7  cagttgaagctgccagcatgatctcaacttccct 40




>41592_vvi-MIR167b:mirbase
          Length = 99

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 41 cctttgtcgaggaaagaacagatcatgtggcagtttcacctg 82
          ||||| || ||||||||  |||||||||||||||||||||||
Sbjct: 50 cctttctccaggaaagactagatcatgtggcagtttcacctg 91



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  cagttgaagctgccagcatgatct 30
          ||||||||||||||||||||||||
Sbjct: 7  cagttgaagctgccagcatgatct 30




>41533_sly-MIR167:mirbase
          Length = 116

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  cactatcagttgaagctgccagcatgatct 30
          ||||| ||||||||||||||||||||||||
Sbjct: 9  cactagcagttgaagctgccagcatgatct 38



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 47 tcgaggaaagaacagatcatgtggcag 73
          ||||||||||| |||||||||||||||
Sbjct: 66 tcgaggaaagatcagatcatgtggcag 92




>41341_ptc-MIR167c:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  cactatcagttgaagctgccagcatgatct 30
          ||||| ||||||||||||||||||||||||
Sbjct: 1  cactagcagttgaagctgccagcatgatct 30




>41339_ptc-MIR167a:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  cactatcagttgaagctgccagcatgatct 30
          ||||| ||||||||||||||||||||||||
Sbjct: 1  cactagcagttgaagctgccagcatgatct 30




>41098_tcc-MIR167a:mirbase
          Length = 111

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  cactatcagttgaagctgccagcatgatct 30
          ||||| ||||||||||||||||||||||||
Sbjct: 11 cactagcagttgaagctgccagcatgatct 40




>41346_ptc-MIR167h:mirbase
          Length = 91

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 50 aggaaagaacagatcatgtggcagtttcacct 81
          ||||||||  ||||||||||||||||||||||
Sbjct: 55 aggaaagactagatcatgtggcagtttcacct 86



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 3  ctatcagttgaagctgccagcatgatct 30
          |||| |||||||||||||| ||||||||
Sbjct: 3  ctattagttgaagctgccaacatgatct 30




>40632_gso-MIR167a:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  cagttgaagctgccagcatgatct 30
          ||||||||||||||||||||||||
Sbjct: 5  cagttgaagctgccagcatgatct 28



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 54 aagaacagatcatgtggcagtttcacctg 82
          |||||||||||||||||| | ||||||||
Sbjct: 48 aagaacagatcatgtggctgcttcacctg 76




>40447_gma-MIR167g:mirbase
          Length = 78

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  cagttgaagctgccagcatgatct 30
          ||||||||||||||||||||||||
Sbjct: 4  cagttgaagctgccagcatgatct 27



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 54 aagaacagatcatgtggcagtttcacctg 82
          |||||||||||||||||| | ||||||||
Sbjct: 47 aagaacagatcatgtggctgcttcacctg 75




>41343_ptc-MIR167e:mirbase
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 8  agttgaagctgccagcatgatct 30




>41280_ctr-MIR167:mirbase
          Length = 121

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 21 agttgaagctgccagcatgatct 43



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagatcatgtggcagtttcacct 81
           |||||||| ||||||||||||||
Sbjct: 78  cagatcatctggcagtttcacct 100




>41227_csi-MIR167a:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 12 agttgaagctgccagcatgatct 34



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 59 cagatcatgtggcagtttcacct 81
          |||||||| ||||||||||||||
Sbjct: 69 cagatcatctggcagtttcacct 91




>41209_ccl-MIR167b:mirbase
          Length = 202

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 18 agttgaagctgccagcatgatct 40



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 59 cagatcatgtggcagtttcacct 81
          |||||||| ||||||||||||||
Sbjct: 75 cagatcatctggcagtttcacct 97




>41208_ccl-MIR167a:mirbase
          Length = 121

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 21 agttgaagctgccagcatgatct 43



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagatcatgtggcagtttcacct 81
           |||||||| ||||||||||||||
Sbjct: 78  cagatcatctggcagtttcacct 100




>40645_lja-MIR167:mirbase
          Length = 108

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 18 agttgaagctgccagcatgatct 40



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 54 aagaacagatcatgtggcagtttcacctg 82
          ||||||||||||| |||||| ||||||||
Sbjct: 66 aagaacagatcatatggcagcttcacctg 94




>40354_rco-MIR167c:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  agttgaagctgccagcatgatct 30
          |||||||||||||||||||||||
Sbjct: 3  agttgaagctgccagcatgatct 25



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 60 agatcatgtggcagtttcacctg 82
          |||||||||||||||||||||||
Sbjct: 51 agatcatgtggcagtttcacctg 73




>42738_zma-MIR167h:mirbase
          Length = 143

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gttgaagctgccagcatgatct 30
          ||||||||||||||||||||||
Sbjct: 19 gttgaagctgccagcatgatct 40




>42521_sbi-MIR167c:mirbase
          Length = 131

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gttgaagctgccagcatgatct 30
          ||||||||||||||||||||||
Sbjct: 18 gttgaagctgccagcatgatct 39




>41752_bdi-MIR167d:mirbase
          Length = 204

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gttgaagctgccagcatgatct 30
          ||||||||||||||||||||||
Sbjct: 29 gttgaagctgccagcatgatct 50




>41591_vvi-MIR167a:mirbase
          Length = 351

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gttgaagctgccagcatgatct 30
          ||||||||||||||||||||||
Sbjct: 9  gttgaagctgccagcatgatct 30




>40443_gma-MIR167c:mirbase
          Length = 375

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gttgaagctgccagcatgatct 30
          ||||||||||||||||||||||
Sbjct: 9  gttgaagctgccagcatgatct 30




>42739_zma-MIR167i:mirbase
          Length = 130

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttgaagctgccagcatgatct 30
          |||||||||||||||||||||
Sbjct: 20 ttgaagctgccagcatgatct 40




>41229_csi-MIR167c:mirbase
          Length = 341

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttgaagctgccagcatgatct 30
          |||||||||||||||||||||
Sbjct: 10 ttgaagctgccagcatgatct 30




>42740_zma-MIR167j:mirbase
          Length = 109

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 2  tgaagctgccagcatgatct 21



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cagatcatgtggcagtttca 78
           ||||||||||||||||||||
Sbjct: 87  cagatcatgtggcagtttca 106




>42737_zma-MIR167g:mirbase
          Length = 243

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 21 tgaagctgccagcatgatct 40




>42736_zma-MIR167f:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 21 tgaagctgccagcatgatct 40




>42735_zma-MIR167e:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 21 tgaagctgccagcatgatct 40




>42734_zma-MIR167d:mirbase
          Length = 133

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 17 tgaagctgccagcatgatct 36




>42733_zma-MIR167c:mirbase
          Length = 132

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 17 tgaagctgccagcatgatct 36




>42732_zma-MIR167b:mirbase
          Length = 127

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 19 tgaagctgccagcatgatct 38




>42731_zma-MIR167a:mirbase
          Length = 190

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tgaagctgccagcatgatct 30
          ||||||||||||||||||||
Sbjct: 17 tgaagctgccagcatgatct 36