miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 159 bits (80), Expect = 8e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 tcgacatgactggttgttgt 80
||||||||||||||||||||
Sbjct: 61 tcgacatgactggttgttgt 80
Score = 85.7 bits (43), Expect = 9e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 113 bits (57), Expect = 4e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 t 61
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135
>41215_crt-MIR168:mirbase
Length = 201
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 123 gcgaattggatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||||||||||
Sbjct: 132 gcgaattggatcccgccttgcatcaactgaatcggag 168
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
>41210_ccl-MIR168:mirbase
Length = 176
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 123 gcgaattggatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcggag 167
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
||||||| |||||||||||||||||||||||||||||
Sbjct: 10 ggtctctaattcgcttggtgcaggtcgggaactgatt 46
>40448_gma-MIR168:mirbase
Length = 125
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 124 cgaattggatcccgccttgcatcaactgaatcggagg 160
|||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggagg 114
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
||||||| ||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
>41101_tcc-MIR168:mirbase
Length = 167
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 124 cgaattggatcccgccttgcatcaactgaatcggag 159
||||||||||||||||||||||||||||||||||||
Sbjct: 117 cgaattggatcccgccttgcatcaactgaatcggag 152
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
>40044_ath-MIR168b:mirbase
Length = 124
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
|||||| ||||||||||||||||||||||||||||||
Sbjct: 9 ggtctcggattcgcttggtgcaggtcgggaactgatt 45
>39833_aly-MIR168b:mirbase
Length = 176
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
|||||| ||||||||||||||||||||||||||||||
Sbjct: 33 ggtctcggattcgcttggtgcaggtcgggaactgatt 69
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 131 gatcccgccttgcatcaactgaatcggag 159
||||||| |||| ||||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggag 138
>40355_rco-MIR168:mirbase
Length = 131
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcg 156
||||||||||||||||||||||||||||||||
Sbjct: 97 gaattggatcccgccttgcatcaactgaatcg 128
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||
Sbjct: 4 attcgcttggtgcaggtcgggaactgatt 32
>40043_ath-MIR168a:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
||||||||||||||||||||||||| |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48
>39832_aly-MIR168a:mirbase
Length = 155
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
||||||||||||||||||||||||| |||||||
Sbjct: 21 gattcgcttggtgcaggtcgggaaccaattcggc 54
>40271_bna-MIR168:mirbase
Length = 133
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 ctctgattcgcttggtgcaggtcgggaactgatt 37
|||||| |||||||||||||||||||||||||||
Sbjct: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44
>41596_vvi-MIR168:mirbase
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 131 gatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
>42742_zma-MIR168b:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>42741_zma-MIR168a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 60 ggatcccgccttgcaccaagtgaatcggag 89
>42460_sof-MIR168b:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>42459_sof-MIR168a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>41962_osa-MIR168a:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>41961_osa-MIR168a:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>41888_hvu-MIR168:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcggag 95
>41887_hvu-MIR168:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcggag 95
>41753_bdi-MIR168:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 75 ggatcccgccttgcaccaagtgaatcggag 104
