miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41520_ptc-MIR1446e:mirbase
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
Query: 61 gtgtttccctgtagcagtcgaggcgagggggtttcggaaaatgttgg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtttccctgtagcagtcgaggcgagggggtttcggaaaatgttgg 107
>41519_ptc-MIR1446d:mirbase
Length = 105
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
Query: 61 gtgtttccctgtagcagtcgagg 83
||||||| ||||||||||||||
Sbjct: 61 gtgtttctgtgtagcagtcgagg 83
>41518_ptc-MIR1446c:mirbase
Length = 105
Score = 89.7 bits (45), Expect = 4e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
>41516_ptc-MIR1446a:mirbase
Length = 105
Score = 83.8 bits (42), Expect = 2e-17
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 gtgtttccctgtagcagtcgaggcgagggg 90
|||||| |||||| || |||| ||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgagggg 90
>41517_ptc-MIR1446b:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 9 ttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaagtgtttcc 68
||||||||||||||||||||| || | ||||||| ||| | ||||||||| ||||||
Sbjct: 9 ttctgaactctctccctcaaccgccactctagaggttggca--ccttgtcaattgtttct 66
Query: 69 ctgtagcagtcgaggcgagggg 90
|||||| ||||||| ||||||
Sbjct: 67 gtgtagcggtcgaggtgagggg 88
