miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41450_ptc-MIR399c:mirbase
          Length = 126

 Score =  218 bits (110), Expect = 6e-58
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 62

                                                             
Query: 61  gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 12




>41449_ptc-MIR399b:mirbase
          Length = 126

 Score =  218 bits (110), Expect = 6e-58
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 62

                                                             
Query: 61  gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 12




>41672_vvi-MIR399e:mirbase
          Length = 112

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           |||||||||||||||||||||||||
Sbjct: 106 attgccgggcaaatctcctttggca 82




>41246_csi-MIR399a:mirbase
          Length = 155

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           |||||||||||||||||||||||||
Sbjct: 138 attgccgggcaaatctcctttggca 114




>41149_tcc-MIR399d:mirbase
          Length = 136

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           |||||||||||||||||||||||||
Sbjct: 120 attgccgggcaaatctcctttggca 96




>41147_tcc-MIR399b:mirbase
          Length = 135

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           |||||||||||||||||||||||||
Sbjct: 119 attgccgggcaaatctcctttggca 95



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 76  agtggctgcatgccaatgg-aagcttgccctgtaat 110
           ||||||||| ||||||||| || |||||||||||||
Sbjct: 52  agtggctgcctgccaatggaaatcttgccctgtaat 17




>40384_rco-MIR399b:mirbase
          Length = 106

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           |||||||||||||||||||||||||
Sbjct: 105 attgccgggcaaatctcctttggca 81




>40385_rco-MIR399c:mirbase
          Length = 96

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 4  gccgggcaaatctcctttggcatg 27
          ||||||||||||||||||||||||
Sbjct: 92 gccgggcaaatctcctttggcatg 69




>41457_ptc-MIR399j:mirbase
          Length = 112

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                 
Query: 74  ttagtggctgcatgccaatggaag-cttgccctgtaat 110
           ||||||||||| |||||||||| | |||||||||||||
Sbjct: 41  ttagtggctgcctgccaatggaggtcttgccctgtaat 4



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   ttgccgggcaaatctcctttggca 25
           ||||||| ||||||||||||||||
Sbjct: 105 ttgccggacaaatctcctttggca 82




>42594_sbi-MIR399f:mirbase
          Length = 120

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 105 attgctgggcaaatctcctttggca 81




>42593_sbi-MIR399e:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 111 attgctgggcaaatctcctttggca 87




>42046_osa-MIR399f:mirbase
          Length = 117

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 111 attgctgggcaaatctcctttggca 87




>42045_osa-MIR399e:mirbase
          Length = 118

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 112 attgctgggcaaatctcctttggca 88




>41448_ptc-MIR399a:mirbase
          Length = 120

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 115 attgcggggcaaatctcctttggca 91




>41153_tcc-MIR399h:mirbase
          Length = 117

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 101 attgcggggcaaatctcctttggca 77




>40737_mtr-MIR399g:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 103 attgctgggcaaatctcctttggca 79




>40387_rco-MIR399e:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 107 attgctgggcaaatctcctttggca 83




>40299_bna-MIR399:mirbase
          Length = 102

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgggcaaatctcctttggca 25
           |||||||||||||||||||||
Sbjct: 101 ccgggcaaatctcctttggca 81




>40097_ath-MIR399f:mirbase
          Length = 118

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgggcaaatctcctttggca 25
           |||||||||||||||||||||
Sbjct: 108 ccgggcaaatctcctttggca 88




>40095_ath-MIR399d:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 1  attgccgggcaaatctcctttggca 25
          ||||| |||||||||||||||||||
Sbjct: 94 attgcggggcaaatctcctttggca 70




>39893_aly-MIR399j:mirbase
          Length = 136

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgggcaaatctcctttggca 25
           |||||||||||||||||||||
Sbjct: 116 ccgggcaaatctcctttggca 96




>39892_aly-MIR399i:mirbase
          Length = 127

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 116 attgcggggcaaatctcctttggca 92




>39891_aly-MIR399h:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgggcaaatctcctttggca 25
           |||||||||||||||||||||
Sbjct: 102 ccgggcaaatctcctttggca 82




>39890_aly-MIR399g:mirbase
          Length = 157

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 135 attgcggggcaaatctcctttggca 111




>39887_aly-MIR399d:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   attgccgggcaaatctcctttggca 25
           ||||| |||||||||||||||||||
Sbjct: 108 attgcggggcaaatctcctttggca 84




>39884_aly-MIR399a:mirbase
          Length = 162

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgggcaaatctcctttggca 25
           |||||||||||||||||||||
Sbjct: 133 ccgggcaaatctcctttggca 113