miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
Query: 69 agcaggaacagga 81
|||||||||||||
Sbjct: 61 agcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
Query: 69 agcaggaacagga 81
|||||||||||||
Sbjct: 61 agcaggaacagga 73
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>28270_ggo-mir-24:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 68
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 69 agcaggaacagg 80
||||||||||||
Sbjct: 61 agcaggaacagg 72
>26961_eca-mir-24:mirbase
Length = 68
Score = 119 bits (60), Expect = 4e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 15 ctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcagg 74
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcagg 60
Query: 75 aacaggag 82
||||||||
Sbjct: 61 aacaggag 68
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 19 cgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcaggaaca 78
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
Query: 79 gg 80
||
Sbjct: 61 gg 62
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/88 (89%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 gggctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcag 65
|||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 11 gggctccgcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcag 68
Query: 66 ttcagcaggaacaggagtcaagccccct 93
||||||||||||||||||| ||||||||
Sbjct: 69 ttcagcaggaacaggagtccagccccct 96
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1 tccctgggctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactgg 60
||||||||||| |||||| |||||||||||||||||||| ||||||| | ||||||
Sbjct: 6 tccctgggctccgcctcctgtgcctactgagctgaaaca--gttgattccagtgcactgg 63
Query: 61 ctcagttcagcaggaacaggagtcaagccccc 92
|||||||||||||||||||||||| |||||||
Sbjct: 64 ctcagttcagcaggaacaggagtccagccccc 95
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 13 gcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagca 72
|||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 1 gcctcctgtgcctactgagctgaaacacagttgctttggataaactggctcagttcagca 60
Query: 73 ggaacaggagtc 84
||||||||||||
Sbjct: 61 ggaacaggagtc 72
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 6 gggctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcag 65
|||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 83 gggctccgcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcag 26
Query: 66 ttcagcaggaacaggagtcaagccc 90
||||||||||||||||||| |||||
Sbjct: 25 ttcagcaggaacaggagtccagccc 1
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 6 gggctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcag 65
|||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 83 gggctccgcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcag 26
Query: 66 ttcagcaggaacaggagtcaagccc 90
||||||||||||||||||| |||||
Sbjct: 25 ttcagcaggaacaggagtccagccc 1
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 53 cacactggctcagttcagcaggaacaggagtcaagccc 90
|||||||||||||||||||||||||||||||| |||||
Sbjct: 38 cacactggctcagttcagcaggaacaggagtcgagccc 1
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 53 cacactggctcagttcagcaggaacaggagtcaagccc 90
|||||||||||||||||||||||||||||||| |||||
Sbjct: 38 cacactggctcagttcagcaggaacaggagtcgagccc 1
>33024_rno-mir-3074:mirbase
Length = 117
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 53 cacactggctcagttcagcaggaacaggagtcaagccc 90
|||||||||||||||||||||||||||||||| |||||
Sbjct: 51 cacactggctcagttcagcaggaacaggagtcgagccc 14
>26413_tgu-mir-24:mirbase
Length = 132
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggagtcaagcc 89
|||||||||||||||||||||||||||||||| ||||
Sbjct: 96 cacactggctcagttcagcaggaacaggagtcgagcc 132
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 53 cacactggctcagttcagcaggaacaggagtc 84
||||||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacaggagtc 5
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 53 cacactggctcagttcagcaggaacaggagtc 84
||||||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacaggagtc 5
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggagtc 84
||||||||||||||||||||||||||||||||
Sbjct: 47 cacactggctcagttcagcaggaacaggagtc 78
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 acactggctcagttcagcaggaacaggagtc 84
|||||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggagtc 106
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacaggag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacaggag 67
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacaggag 67
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcaggaacaggag 82
||||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacaggag 68
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacaggagtc 84
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 48 ttgtgcacactggctcagttcagcaggaacagg 80
|||| ||||||||||||||||||||||||||||
Sbjct: 30 ttgtacacactggctcagttcagcaggaacagg 62
>31442_oan-mir-24:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacaggagt 83
|||||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacaggagt 77
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacaggagt 83
|||||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacaggagt 74
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacaggagt 83
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacaggagt 83
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>25908_gga-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacaggag 82
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacaggagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 55 cactggctcagttcagcaggaacagaagtc 84
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacagg 80
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacagg 80
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacagg 80
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacagg 80
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 cacactggctcagttcagcagga 75
|||||||||||||||||||||||
Sbjct: 35 cacactggctcagttcagcagga 57
