miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41691_vvi-MIR828a:mirbase
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 tataaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tataaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactg 60
Query: 61 tcatagtctctgcatgtggattgttgttgagatgctcatttgaggaagcaaccttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatagtctctgcatgtggattgttgttgagatgctcatttgaggaagcaaccttaaaaa 120
Query: 121 tg 122
||
Sbjct: 121 tg 122
>41692_vvi-MIR828b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattcca 31
||||||||||||||||||| |||||
Sbjct: 8 gtttcttgctcaaatgagtgttcca 32
>40146_ath-MIR828:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattcca 31
|||||||||| ||||||||||||||
Sbjct: 47 gtttcttgcttaaatgagtattcca 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 tgagatgctcatttgaggaagcaa 111
||||||||||||||||| ||||||
Sbjct: 121 tgagatgctcatttgagcaagcaa 144
>39910_aly-MIR828:mirbase
Length = 199
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattcca 31
|||||||||| ||||||||||||||
Sbjct: 48 gtttcttgcttaaatgagtattcca 72
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 tgagatgctcatttgaggaagcaa 111
||||||||||||||||| ||||||
Sbjct: 127 tgagatgctcatttgagcaagcaa 150