miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41691_vvi-MIR828a:mirbase
          Length = 122

 Score =  242 bits (122), Expect = 5e-65
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tataaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactg 60

                                                                       
Query: 61  tcatagtctctgcatgtggattgttgttgagatgctcatttgaggaagcaaccttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcatagtctctgcatgtggattgttgttgagatgctcatttgaggaagcaaccttaaaaa 120

             
Query: 121 tg 122
           ||
Sbjct: 121 tg 122




>41692_vvi-MIR828b:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 7  gtttcttgctcaaatgagtattcca 31
          ||||||||||||||||||| |||||
Sbjct: 8  gtttcttgctcaaatgagtgttcca 32




>40146_ath-MIR828:mirbase
          Length = 191

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 7  gtttcttgctcaaatgagtattcca 31
          |||||||||| ||||||||||||||
Sbjct: 47 gtttcttgcttaaatgagtattcca 71



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  tgagatgctcatttgaggaagcaa 111
           ||||||||||||||||| ||||||
Sbjct: 121 tgagatgctcatttgagcaagcaa 144




>39910_aly-MIR828:mirbase
          Length = 199

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 7  gtttcttgctcaaatgagtattcca 31
          |||||||||| ||||||||||||||
Sbjct: 48 gtttcttgcttaaatgagtattcca 72



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  tgagatgctcatttgaggaagcaa 111
           ||||||||||||||||| ||||||
Sbjct: 127 tgagatgctcatttgagcaagcaa 150