miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>25674_xla-mir-703:mirbase
          Length = 108

 Score = 97.6 bits (49), Expect = 2e-21
 Identities = 58/60 (96%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                       
Query: 46  ggttaatgataacaatgcatcgtaaaaccttcagaaggaaagaatgttttgtggaccatt 105
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 6   ggttaatgataacaatgcatcgtaaaaccttcagaaggaaagaatg--ttgtggaccatt 63



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 27 aacattctttccttctgaaggtt 49
          |||||||||||||||||||||||
Sbjct: 53 aacattctttccttctgaaggtt 31




>32323_mmu-mir-703:mirbase
          Length = 109

 Score = 89.7 bits (45), Expect = 4e-19
 Identities = 57/60 (95%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                       
Query: 46  ggttaatgataacaatgcatcgtaaaaccttcagaaggaaagaatgttttgtggaccatt 105
           ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||
Sbjct: 6   ggttaatgataacaatgcatcataaaaccttcagaaggaaagaatg--ttgtggaccatt 63



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 27 aacattctttccttctgaaggtt 49
          |||||||||||||||||||||||
Sbjct: 53 aacattctttccttctgaaggtt 31




>27258_eca-mir-703:mirbase
          Length = 64

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 38/41 (92%), Gaps = 3/41 (7%)
 Strand = Plus / Plus

                                                    
Query: 68  taaaaccttcagaaggaa---agaatgttttgtggaccatt 105
           ||||||||||||||||||   ||||||||||||||||||||
Sbjct: 1   taaaaccttcagaaggaaaggagaatgttttgtggaccatt 41



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 33/36 (91%), Gaps = 3/36 (8%)
 Strand = Plus / Minus

                                              
Query: 17 tggtccacaaaacatt---ctttccttctgaaggtt 49
          ||||||||||||||||   |||||||||||||||||
Sbjct: 39 tggtccacaaaacattctcctttccttctgaaggtt 4