miRNEST 2.0, an integrative microRNA resource :: BLAST
>40338_rco-MIR159:mirbase
Length = 180
Score = 75.8 bits (38), Expect = 1e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 105 taggcttatggcttgcatatttcaggagctttattaccttttagtttgatctttatttgg 164
||||||| |||||||||||| |||||||||| |||||||| || || |||| || |||||
Sbjct: 101 taggcttgtggcttgcatatctcaggagcttcattaccttgta-ttagatccttgtttgg 159
Query: 165 attgaagggagctc 178
||||||||||||||
Sbjct: 160 attgaagggagctc 173
Score = 50.1 bits (25), Expect = 6e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatccca 78
||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 25 agaggatcttgatgggtagattgagctgctgagctatggatccca 69
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 73.8 bits (37), Expect = 4e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 114 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 173
||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaaggg 171
Query: 174 agctc 178
|||||
Sbjct: 172 agctc 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 43 tgctgggtagatcaagctgctggactatggatccca 78
||||||||||||| |||||||| ||||| ||||||
Sbjct: 41 tgctgggtagatcgagctgctgagctatgaatccca 76
>41528_sly-MIR159:mirbase
Length = 177
Score = 58.0 bits (29), Expect = 3e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 117 ttgcatatttcaggagctttatt--accttttagtttgatctttatttggattgaaggga 174
|||||||| |||||||||||||| ||| ||| |||||||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacccttt-gtttgatcattttttggattgaaggga 171
Query: 175 gctc 178
||||
Sbjct: 172 gctc 175
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 144 tttagtttgatctttatttggattgaagggagctc 178
|||||||| |||||| |||||||||||||||||||
Sbjct: 136 tttagtttaatctttctttggattgaagggagctc 170
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 52.0 bits (26), Expect = 2e-07
Identities = 118/145 (81%), Gaps = 4/145 (2%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatcccaaaagtcctatcctct 93
||||| ||||||||||||||| |||||||| |||||||||| | |||||||| || |
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc--acagtcctat-ctat 88
Query: 94 aattttaagggtaggcttatggcttgcatatttcaggagctttattaccttttagtttga 153
| | |||| |||| || ||||||||||| |||||||||||||| ||| | ||| ||
Sbjct: 89 caactgaaggataggtttgcggcttgcatatctcaggagctttattgcctaat-gttaga 147
Query: 154 tctttatttggattgaagggagctc 178
|| | |||||||||||||||||||
Sbjct: 148 tccctttttggattgaagggagctc 172
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 50.1 bits (25), Expect = 6e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 114 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 173
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 167
Query: 174 agctc 178
|||||
Sbjct: 168 agctc 172
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatcc 76
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc 74
>40397_ahy-MIR159:mirbase
Length = 197
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 gatctttatttggattgaagggagctc 178
|||| ||||||||||||||||||||||
Sbjct: 149 gatccttatttggattgaagggagctc 175
>39804_aly-MIR159a:mirbase
Length = 222
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 tatggcttgcatatttcaggagcttta 137
|||||||||||||| ||||||||||||
Sbjct: 128 tatggcttgcatatctcaggagcttta 154
>41919_osa-MIR159c:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctccaca 182
||||||||||||||||||||||
Sbjct: 168 ttggattgaagggagctccaca 189
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 taggcttatggcttgcatatttcaggagct 134
||||||| |||||||||||| |||||||||
Sbjct: 106 taggcttgtggcttgcatatctcaggagct 135
>41218_csi-MIR159:mirbase
Length = 216
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 105 taggcttatggcttgcatatttcaggagctttattacc 142
||||||| ||||||||||||||| ||| ||| ||||||
Sbjct: 127 taggcttgtggcttgcatatttctggaccttcattacc 164
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 155 ctttatttggattgaagggagctc 178
|||| |||||||||||||||||||
Sbjct: 181 ctttttttggattgaagggagctc 204
>41917_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 gttgagctcctttctgtccaaaaag 35
|||||||||||||| ||||||||||
Sbjct: 10 gttgagctcctttcggtccaaaaag 34
>41916_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 gttgagctcctttctgtccaaaaag 35
|||||||||||||| ||||||||||
Sbjct: 10 gttgagctcctttcggtccaaaaag 34
>39424_pta-MIR319:mirbase
Length = 206
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 161 ttggattgaagggagctccac 181
|||||||||||||||||||||
Sbjct: 26 ttggattgaagggagctccac 6
>39417_pta-MIR159a:mirbase
Length = 210
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctccac 181
|||||||||||||||||||||
Sbjct: 185 ttggattgaagggagctccac 205
>40432_gma-MIR159a:mirbase
Length = 214
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctccacac 183
||||||||||||||||||| ||||
Sbjct: 175 tttggattgaagggagctctacac 198
>40018_ath-MIR159c:mirbase
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcc 179
||||||||||||||||||||
Sbjct: 195 tttggattgaagggagctcc 214
>39806_aly-MIR159c:mirbase
Length = 220
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcc 179
||||||||||||||||||||
Sbjct: 197 tttggattgaagggagctcc 216
