miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40342_rco-MIR162:mirbase
          Length = 101

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 89/99 (89%), Gaps = 3/99 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggagattttttgttctgaa-ctgcaataaa 78
           ||||||||||||||||||||||||||||||||| |  ||||||| |||| |   ||||||
Sbjct: 4   ctggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaa 62

                                                  
Query: 79  -cacatgaatcgatcgataaacctctgcatccagcgctt 116
            | ||||||||||||||||||||||||||||||||||||
Sbjct: 63  acgcatgaatcgatcgataaacctctgcatccagcgctt 101




>41046_ghr-MIR162a:mirbase
          Length = 148

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 85/96 (88%), Gaps = 3/96 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggagattttttgttctga-actgcaataaa 78
           ||||||||||||||||||||||||||||||| ||| |||| ||| ||| | |   | |||
Sbjct: 24  ctggaggcagcggttcatcgatctcttcctg-agaatttt-gttgtgagaataacacaaa 81

                                               
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgc 114
            |||||||||||||||||||||||||||||||||||
Sbjct: 82  tacatgaatcgatcgataaacctctgcatccagcgc 117




>41313_ptc-MIR162a:mirbase
          Length = 107

 Score = 75.8 bits (38), Expect = 7e-15
 Identities = 84/98 (85%), Gaps = 6/98 (6%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 78
           ||||||||||||||||||||||||||||||||  | |||||||||  | ||      |||
Sbjct: 11  ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 65

                                                 
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgctt 116
            ||||||| |||||||||||||||||||||||||||||
Sbjct: 66  aacatgaaccgatcgataaacctctgcatccagcgctt 103




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 81  catgaatcgatcgataaacctctgcatccagcgctta 117
           |||||||||||||||||||||||||||||||||||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccagcgctta 139



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 11 gtgaagtcgctggaggcagcggttcatcgatc 42
          ||||||||||||||||||||||||||||||||
Sbjct: 41 gtgaagtcgctggaggcagcggttcatcgatc 72




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 15 agtcgctggaggcagcggttcatcgatctcttcctgg 51
          |||||||||||||||||||||||||||||||||||||
Sbjct: 63 agtcgctggaggcagcggttcatcgatctcttcctgg 99



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 81  catgaatcgatcgataaacctctgcatccagcg 113
           ||||||| |||||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158




>41220_csi-MIR162:mirbase
          Length = 201

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 80  acatgaatcgatcgataaacctctgcatccagcgct 115
           ||||||||||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgct 185




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 agtcgctggaggcagcggttcatcgatctcttcctg 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 81  catgaatcgatcgataaacctctgcatccagcg 113
           ||||||| |||||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 81  catgaatcgatcgataaacctctgcatccagcgct 115
           |||||||||||||||||||||||||||||||||||
Sbjct: 63  catgaatcgatcgataaacctctgcatccagcgct 97



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 11 gtgaagtcgctggaggcagcggttcatcgatctcttcctg 50
          |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1  gtgaagtcactggatgcagcggttcatcgatctcttcctg 40




>41090_tcc-MIR162:mirbase
          Length = 131

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 80/93 (86%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggagattttttgttctga-actgcaataaa 78
           ||||||||||||||||||||||||||||||||  |  ||||||| ||| | |   | |||
Sbjct: 21  ctggaggcagcggttcatcgatctcttcctgggaa--ttttgttgtgagaataacacaaa 78

                                            
Query: 79  cacatgaatcgatcgataaacctctgcatccag 111
            |||||| |||||||||||||||||||||||||
Sbjct: 79  tacatgattcgatcgataaacctctgcatccag 111




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 14 aagtcgctggaggcagcggttcatcgatctcttcctgg 51
          ||||| ||||||||||||||||||||||||||||||||
Sbjct: 7  aagtcactggaggcagcggttcatcgatctcttcctgg 44



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 80  acatgaatcgatcgataaacctctgcatccagcg 113
           ||||||||||||||||||||||||||||||||||
Sbjct: 69  acatgaatcgatcgataaacctctgcatccagcg 102




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51




>40663_mtr-MIR162:mirbase
          Length = 124

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 80  acatgaatcgatcgataaacctctgcatccagcgct 115
           |||||||||| |||||||||||||||||||||||||
Sbjct: 76  acatgaatcggtcgataaacctctgcatccagcgct 111



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
          ||||| |||||||||||||||||| ||||||
Sbjct: 21 ctggatgcagcggttcatcgatctgttcctg 51




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 11 gtgaagtcgctggaggcagcggttcatcgatc 42
          ||||||||||||||||||||||||||||||||
Sbjct: 3  gtgaagtcgctggaggcagcggttcatcgatc 34



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 84  gaatcgatcgataaacctctgcatccagcgct 115
           ||||||||||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103




>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 12 tgaagtcgctggaggcagcggttcatcgatctcttcctg 50
          ||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1  tgaagtcactggatgcagcggttcatcgatctcttcctg 39



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 84  gaatcgatcgataaacctctgcatccagcg 113
           |||||| |||||||||||||||||||||||
Sbjct: 66  gaatcggtcgataaacctctgcatccagcg 95




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           ||||||||||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           ||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 84  gaatcgatcgataaacctctgcatcc 109
           ||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||||||||||| |||||||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccag 124




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||| |||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99