miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>42374_osa-MIR2124e:mirbase
          Length = 247

 Score =  224 bits (113), Expect = 2e-59
 Identities = 164/181 (90%)
 Strand = Plus / Plus

                                                                       
Query: 28  caattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatga 87
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 43  caattacacaaattgcgtgtaaattgcgagacgaatcttttaagcctaattgctccatga 102

                                                                       
Query: 88  tttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaa 147
           ||| |||||||||||||| | |||||||||||||||||  |||| ||||| | |||||||
Sbjct: 103 tttgacaatgtggtgctacaataaacatttgctaatgacagattaattagacataataaa 162

                                                                       
Query: 148 ttcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaat 207
           ||||||||| ||||| | || ||||| ||||||||||||||||||||| || ||||||||
Sbjct: 163 ttcgtctcgcagtttataggcggaatatgtaatttgttttgttattagtctacgtttaat 222

            
Query: 208 a 208
           |
Sbjct: 223 a 223




>42372_osa-MIR2124c:mirbase
          Length = 248

 Score =  224 bits (113), Expect = 2e-59
 Identities = 164/181 (90%)
 Strand = Plus / Plus

                                                                       
Query: 28  caattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatga 87
           ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 44  caattacacagtttacgtgtaaattgcgagacaaatcttttaagtctaattgcgccatga 103

                                                                       
Query: 88  tttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaa 147
           ||| |||| |||||| || |||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 104 tttgacaacgtggtggtacagtaaatatttgctaatgatagattaattaggcttaataaa 163

                                                                       
Query: 148 ttcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaat 207
           |||||||||||||||  ||| |||||||||||||| ||||||||||||||  ||||||||
Sbjct: 164 ttcgtctcgtagttttctggcggaatctgtaatttattttgttattagacaacgtttaat 223

            
Query: 208 a 208
           |
Sbjct: 224 a 224




>42373_osa-MIR2124d:mirbase
          Length = 250

 Score =  216 bits (109), Expect = 5e-57
 Identities = 163/181 (90%)
 Strand = Plus / Plus

                                                                       
Query: 28  caattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatga 87
           ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 46  caatttcacagactgcgtgtaaattgcgagaggaatcttttaagcctaattgcgctatga 105

                                                                       
Query: 88  tttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaa 147
           ||| |||||||||||||| |||||| |||||||||||| | ||| |||||||||||||||
Sbjct: 106 tttgacaatgtggtgctacagtaaatatttgctaatgacgaattaattaggcttaataaa 165

                                                                       
Query: 148 ttcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaat 207
           |||| |||| |||||  ||| |||||||||||||| |||||||||||||||  |||||||
Sbjct: 166 ttcgactcgcagttttctggcggaatctgtaatttattttgttattagactatgtttaat 225

            
Query: 208 a 208
           |
Sbjct: 226 a 226




>42079_osa-MIR442:mirbase
          Length = 233

 Score =  206 bits (104), Expect = 5e-54
 Identities = 161/180 (89%)
 Strand = Plus / Plus

                                                                       
Query: 29  aattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgat 88
           ||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41  aattatacagatgacgtgtaaattgcgagacgaatcttttaagcctaattgctccatgat 100

                                                                       
Query: 89  ttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaat 148
            | |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 101 ctgacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaat 160

                                                                       
Query: 149 tcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaata 208
           |||||||| |||||   |  ||| ||||||||||||||||||||||| || |||| ||||
Sbjct: 161 tcgtctcgcagtttacagacggattctgtaatttgttttgttattagtctacgttaaata 220



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 45  tgtaaattgcgagacgaatcttttaagcctaatt 78
           |||||| |||||||||||| | ||||||||||||
Sbjct: 177 tgtaaactgcgagacgaatttattaagcctaatt 144




>42370_osa-MIR2124a:mirbase
          Length = 249

 Score =  200 bits (101), Expect = 3e-52
 Identities = 161/181 (88%)
 Strand = Plus / Plus

                                                                       
Query: 28  caattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatga 87
           ||||| |||||||||| ||||||| |||||||||||||||| |||||||||   ||||||
Sbjct: 45  caattgcacagattgcatgtaaatcgcgagacgaatcttttgagcctaattataccatga 104

                                                                       
Query: 88  tttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaa 147
           ||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 105 tttgacaatgtggtgctacagtaaatatttgctaatgacggattaattaggcttaataaa 164

                                                                       
Query: 148 ttcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaat 207
           || |||||| |||||   || ||||||||||||||||||||||||||| || ||||||||
Sbjct: 165 tttgtctcgcagtttacaggcggaatctgtaatttgttttgttattagtctacgtttaat 224

            
Query: 208 a 208
           |
Sbjct: 225 a 225




>42378_osa-MIR2124i:mirbase
          Length = 250

 Score =  198 bits (100), Expect = 1e-51
 Identities = 160/180 (88%)
 Strand = Plus / Plus

                                                                       
Query: 29  aattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgat 88
           ||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 47  aattacatagattgcgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgat 106

                                                                       
Query: 89  ttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaat 148
            | |||||||||||||| |||||||||||| |||| ||||||| || |||||||||||||
Sbjct: 107 ctgacaatgtggtgctacagtaaacatttgttaataatggattaatcaggcttaataaat 166

                                                                       
Query: 149 tcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaata 208
           ||| ||||||||||    |||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 167 tcgcctcgtagtttacaagtggaatctgtaatttgtttcgttgttagcctacgtttaata 226




>42376_osa-MIR2124g:mirbase
          Length = 251

 Score =  174 bits (88), Expect = 2e-44
 Identities = 157/180 (87%)
 Strand = Plus / Plus

                                                                       
Query: 29  aattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgat 88
           |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct: 48  aattacacagattgcgtgtaaattgcgacacgaatcttttaagcataattgctccatgat 107

                                                                       
Query: 89  ttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaat 148
            | |||||||| ||||| ||||||||||||||||| | | ||| ||||| ||||||||||
Sbjct: 108 ctgacaatgtgatgctacagtaaacatttgctaataacgaattaattagtcttaataaat 167

                                                                       
Query: 149 tcgtctcgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaata 208
           ||||||||  ||||   || ||| ||| ||||||||||||||||||| || | |||||||
Sbjct: 168 tcgtctcgcggtttacaggcggattctctaatttgttttgttattagtctacatttaata 227




>42371_osa-MIR2124b:mirbase
          Length = 239

 Score =  174 bits (88), Expect = 2e-44
 Identities = 115/124 (92%)
 Strand = Plus / Plus

                                                                       
Query: 29  aattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgat 88
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 49  aattacacagattgcgtgtaaattgcgagacaaatcttttaagtctaattgcgccatgat 108

                                                                       
Query: 89  ttaacaatgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaat 148
           || ||||| |||||||| |||||||||||||||||   ||||| ||||||||||||||||
Sbjct: 109 ttgacaatatggtgctacagtaaacatttgctaataccggattaattaggcttaataaat 168

               
Query: 149 tcgt 152
           ||||
Sbjct: 169 tcgt 172




>42375_osa-MIR2124f:mirbase
          Length = 252

 Score =  147 bits (74), Expect = 4e-36
 Identities = 149/174 (85%)
 Strand = Plus / Plus

                                                                       
Query: 35  acagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgatttaaca 94
           |||| |||| |||||||||||||| |||||||||||  |||||||||||||||||| | |
Sbjct: 55  acagtttgcatgtaaattgcgagatgaatcttttaactctaattgcgccatgatttgata 114

                                                                       
Query: 95  atgtggtgctatagtaaacatttgctaatgatggattgattaggcttaataaattcgtct 154
           || ||||| || ||||||| |||||||||||| |||| ||||| ||||| ||||||||||
Sbjct: 115 atatggtgttacagtaaacttttgctaatgatagattaattagccttaacaaattcgtct 174

                                                                 
Query: 155 cgtagtttcttggtggaatctgtaatttgttttgttattagactgcgtttaata 208
           | | ||||   || |||  ||| ||||||||||||||||||||| |||||||||
Sbjct: 175 cttggtttacaggcggatcctgcaatttgttttgttattagactacgtttaata 228




>42377_osa-MIR2124h:mirbase
          Length = 275

 Score =  105 bits (53), Expect = 1e-23
 Identities = 156/193 (80%), Gaps = 13/193 (6%)
 Strand = Plus / Plus

                                                                       
Query: 29  aattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgat 88
           |||||||||||||| ||||||||| ||||| |||||||||||||||||||||  | ||||
Sbjct: 56  aattacacagattgtgtgtaaattacgagatgaatcttttaagcctaattgcttcttgat 115

                                                                       
Query: 89  tt-------------aacaatgtggtgctatagtaaacatttgctaatgatggattgatt 135
           ||              |||||||||||||| ||||||||| |||||| || ||||| |||
Sbjct: 116 ttgacaatgtggtgctacaatgtggtgctacagtaaacatatgctaacgagggattaatt 175

                                                                       
Query: 136 aggcttaataaattcgtctcgtagtttcttggtggaatctgtaatttgttttgttattag 195
           |||||||||||||| ||||||  ||||    ||||||||||||||||||||| ||| |||
Sbjct: 176 aggcttaataaatttgtctcgcggtttacaagtggaatctgtaatttgttttattactag 235

                        
Query: 196 actgcgtttaata 208
            ||  ||||||||
Sbjct: 236 tctatgtttaata 248




>42092_osa-MIR445a:mirbase
          Length = 268

 Score =  103 bits (52), Expect = 5e-23
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                       
Query: 53  gcgagacgaatcttttaagcctaattgcgccatgatttaacaatgtggtgctatagtaaa 112
           |||||||||||||||| || |||||| | ||||||||| |||||||| ||||| ||||||
Sbjct: 186 gcgagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaa 127

                                                       
Query: 113 catttgctaatgatggattgattaggcttaataaattcgtctcg 156
           | |||  |||| ||||||| ||||||||||| ||||||||||||
Sbjct: 126 cttttcataattatggattaattaggcttaaaaaattcgtctcg 83



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 52  tgcgagacgaatcttttaagcctaatt 78
           |||||||||||| ||||||||||||||
Sbjct: 81  tgcgagacgaattttttaagcctaatt 107




>42094_osa-MIR445c:mirbase
          Length = 260

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 54  cgagacgaatcttttaagcctaattgcgccatgatt 89
           ||||||||||||||||||||||||| | ||||||||
Sbjct: 173 cgagacgaatcttttaagcctaattacaccatgatt 138



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtctcg 156
           |||||||| |||  |||| ||||||| ||||||||||| ||||||||||||
Sbjct: 138 tagtaaacttttcataattatggattaattaggcttaaaaaattcgtctcg 88



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 52  tgcgagacgaatcttttaagcctaatt 78
           |||||||||||| ||||||||||||||
Sbjct: 86  tgcgagacgaattttttaagcctaatt 112




>42099_osa-MIR445h:mirbase
          Length = 277

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtctcg 156
           |||||||| |||  |||| ||||||| ||||||||||| ||||||||||||
Sbjct: 146 tagtaaacttttcataattatggattaattaggcttaaaaaattcgtctcg 96



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 52  tgcgagacgaatcttttaagcctaatt 78
           |||||||||||| ||||||||||||||
Sbjct: 94  tgcgagacgaattttttaagcctaatt 120



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 53  gcgagacgaatcttttaagcctaattgcgccatgatt 89
           |||||||||||||||| || |||||| | ||||||||
Sbjct: 182 gcgagacgaatcttttgagtctaattacaccatgatt 146




>42098_osa-MIR445g:mirbase
          Length = 275

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtctcg 156
           |||||||| |||  |||| ||||||| ||||||||||| ||||||||||||
Sbjct: 145 tagtaaacttttcataattatggattaattaggcttaaaaaattcgtctcg 95



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 52  tgcgagacgaatcttttaagcctaatt 78
           |||||||||||| ||||||||||||||
Sbjct: 93  tgcgagacgaattttttaagcctaatt 119




>42096_osa-MIR445e:mirbase
          Length = 265

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtctcg 156
           |||||||| |||  |||| ||||||| ||||||||||| ||||||||||||
Sbjct: 140 tagtaaacttttcataattatggattaattaggcttaaaaaattcgtctcg 90



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 52  tgcgagacgaatcttttaagcctaatt 78
           |||||||||||| ||||||||||||||
Sbjct: 88  tgcgagacgaattttttaagcctaatt 114



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 53  gcgagacgaatcttttaagcctaattgcgccatgatt 89
           |||||||||||||||| || |||||| | ||||||||
Sbjct: 176 gcgagacgaatcttttgagtctaattacaccatgatt 140




>42097_osa-MIR445f:mirbase
          Length = 305

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtc 153
           |||||||| |||  |||| ||||||| ||||||||||| |||||||||
Sbjct: 161 tagtaaacttttcataattatggattaattaggcttaaaaaattcgtc 114



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 53  gcgagacgaatcttttaagcctaattgcgccatgatt 89
           |||||||||||||||| || |||||| | ||||||||
Sbjct: 197 gcgagacgaatcttttgagtctaattacaccatgatt 161




>42093_osa-MIR445b:mirbase
          Length = 264

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 106 tagtaaacatttgctaatgatggattgattaggcttaataaattcgtctcg 156
           |||||||| |||  |||| ||||||| ||||||||||| || |||||||||
Sbjct: 139 tagtaaacttttcataattatggattaattaggcttaaaaagttcgtctcg 89



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 53  gcgagacgaatcttttaagcctaattgcgccatgatt 89
           |||||||||||||||| || |||||| | ||||||||
Sbjct: 175 gcgagacgaatcttttgagtctaattacaccatgatt 139




>42095_osa-MIR445d:mirbase
          Length = 312

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 95  atgtggtgctatagtaaacatttgctaatgatggattgattaggcttaa 143
           ||||| ||||| | ||||||| || |||| ||||||| |||||||||||
Sbjct: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193