miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41046_ghr-MIR162a:mirbase
          Length = 148

 Score =  131 bits (66), Expect = 2e-31
 Identities = 96/105 (91%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  gggtgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacac 78
           |||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||| | 
Sbjct: 13  gggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa 72

                                                        
Query: 79  taacacaa--acatgaatcggtcgataaacctctgcatccagcgc 121
           ||||||||  |||||||||| ||||||||||||||||||||||||
Sbjct: 73  taacacaaatacatgaatcgatcgataaacctctgcatccagcgc 117




>41090_tcc-MIR162:mirbase
          Length = 131

 Score =  123 bits (62), Expect = 4e-29
 Identities = 86/93 (92%), Gaps = 2/93 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  cactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacactaacacaa- 86
           ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| 
Sbjct: 19  cactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataacacaaa 78

                                            
Query: 87  -acatgaatcggtcgataaacctctgcatccag 118
            |||||| ||| |||||||||||||||||||||
Sbjct: 79  tacatgattcgatcgataaacctctgcatccag 111




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score =  111 bits (56), Expect = 1e-25
 Identities = 95/104 (91%), Gaps = 3/104 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  agggtgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgaca 77
           ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 1   agggtaaagtcactggaggcagcggttcatcgatctcttcctggg-aatttggtgtga-a 58

                                                       
Query: 78  ctaacaca-aacatgaatcggtcgataaacctctgcatccagcg 120
             | |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 59  aaatcacagaacatgaatcgatcgataaacctctgcatccagcg 102




>41220_csi-MIR162:mirbase
          Length = 201

 Score =  103 bits (52), Expect = 4e-23
 Identities = 97/110 (88%), Gaps = 4/110 (3%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtg-acact 79
           |||||||||||||||||||||||||||||||| |||  ||  || ||||||||| | | |
Sbjct: 80  gtgaagtcactggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaat 139

                                                             
Query: 80  aacacaa---acatgaatcggtcgataaacctctgcatccagcgctcact 126
           |||||||   |||||||||| |||||||||||||||||||||||||||||
Sbjct: 140 aacacaaaatacatgaatcgatcgataaacctctgcatccagcgctcact 189




>40663_mtr-MIR162:mirbase
          Length = 124

 Score =  101 bits (51), Expect = 1e-22
 Identities = 92/102 (90%), Gaps = 4/102 (3%)
 Strand = Plus / Plus

                                                                       
Query: 26  gtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacac-taacac 84
           ||||||||| |||||||||||||||||| ||||||  || |||||| || | | ||| ||
Sbjct: 17  gtcactggatgcagcggttcatcgatctgttcctg--aattttgtt-tgtctcgtaaaac 73

                                                     
Query: 85  aaacatgaatcggtcgataaacctctgcatccagcgctcact 126
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aaacatgaatcggtcgataaacctctgcatccagcgctcact 115




>40342_rco-MIR162:mirbase
          Length = 101

 Score = 99.6 bits (50), Expect = 6e-22
 Identities = 89/100 (89%), Gaps = 4/100 (4%)
 Strand = Plus / Plus

                                                                       
Query: 27  tcactggaggcagcggttcatcgatctcttcctggga-aatttgttgtgacactaacaca 85
           ||||||||||||||||||||||||||||||||||| | | |||||||||| || || | |
Sbjct: 1   tcactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaata 60

                                                   
Query: 86  aa---catgaatcggtcgataaacctctgcatccagcgct 122
           ||   ||||||||| |||||||||||||||||||||||||
Sbjct: 61  aaacgcatgaatcgatcgataaacctctgcatccagcgct 100




>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 85.7 bits (43), Expect = 8e-18
 Identities = 91/105 (86%), Gaps = 4/105 (3%)
 Strand = Plus / Plus

                                                                       
Query: 22  tgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacactaa 81
           ||||||||||||| |||||||||||||||||||||||||   || ||||||||| |  | 
Sbjct: 1   tgaagtcactggatgcagcggttcatcgatctcttcctg---aaattgttgtgaaaaaag 57

                                                        
Query: 82  cacaaacatgaatcggtcgataaacctctgcatccagcgctcact 126
           ||  | || |||||||||||||||||||||||||||||| |||||
Sbjct: 58  ca-gatcaagaatcggtcgataaacctctgcatccagcgttcact 101




>41313_ptc-MIR162a:mirbase
          Length = 107

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 88/102 (86%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                       
Query: 23  gaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttg--tgacacta 80
           |||| ||||||||||||||||||||||||||||||||||  ||||| |||  |  ||| |
Sbjct: 4   gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63

                                                     
Query: 81  acacaaacatgaatcggtcgataaacctctgcatccagcgct 122
           |   ||||||||| || |||||||||||||||||||||||||
Sbjct: 64  a---aaacatgaaccgatcgataaacctctgcatccagcgct 102




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 91/106 (85%), Gaps = 5/106 (4%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacacta 80
           |||||||||||||| |||||||||||||||||||||||||    | | |||||   || |
Sbjct: 1   gtgaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaac-a 55

                                                         
Query: 81  acacaaacatgaatcggtcgataaacctctgcatccagcgctcact 126
            || || ||||||||| |||||||||||||||||||||||||||||
Sbjct: 56  tcagaaccatgaatcgatcgataaacctctgcatccagcgctcact 101




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 25  agtcactggaggcagcggttcatcgatctcttcctgggaa 64
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  agtcgctggaggcagcggttcatcgatctcttcctgggaa 102



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 88  catgaatcggtcgataaacctctgcatccagcg 120
           ||||||| | |||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 85/102 (83%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgaagtcactggaggcagcggttcatcgatctcttcctgggaaatttgttgtgacacta 80
           |||||||| |||||||||||||||||||||||  |||||| |||  || ||||     | 
Sbjct: 41  gtgaagtcgctggaggcagcggttcatcgatcaattcctgtgaatatttttgt-----tt 95

                                                     
Query: 81  acacaaacatgaatcggtcgataaacctctgcatccagcgct 122
            || || ||||||||| |||||||||||||||||||||||||
Sbjct: 96  tcaaaagcatgaatcgatcgataaacctctgcatccagcgct 137




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 25 agtcactggaggcagcggttcatcgatctcttcctg 60
          |||| |||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 88  catgaatcggtcgataaacctctgcatccagcg 120
           ||||||| | |||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctg 60
          |||| |||||||||||||||||||||||||| ||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctg 41




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctg 60
          |||| |||||||||||||||||||||||||| ||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctg 41




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 91  gaatcggtcgataaacctctgcatccag 118
           ||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 91  gaatcggtcgataaacctctgcatccag 118
           ||||||||||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 21 gtgaagtcactggaggcagcggttcatcgatc 52
          |||||||| |||||||||||||||||||||||
Sbjct: 3  gtgaagtcgctggaggcagcggttcatcgatc 34



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 91  gaatcggtcgataaacctctgcatccagcgct 122
           |||||| |||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 91  gaatcggtcgataaacctctgcatccag 118
           |||||| |||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 91  gaatcggtcgataaacctctgcatccag 118
           |||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 91  gaatcggtcgataaacctctgcatcc 116
           |||||| |||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 91  gaatcggtcgataaacctctgcatccag 118
           |||||| ||||||| |||||||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccag 124