miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25976_gga-mir-181b-1:mirbase
Length = 89
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 62
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 63 acaatgaatgcaactgtggcccc 85
>27404_mdo-mir-181b:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactgtatggacaagctcactga 60
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 61 acaatgaatgcaactgtggcccc 83
>27579_lla-mir-181b:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>28315_ggo-mir-181b:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>28485_hsa-mir-181b-1:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>30104_ppa-mir-181b:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>30253_ptr-mir-181b-1:mirbase
Length = 108
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>30867_ppy-mir-181b:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>27769_mml-mir-181b-1:mirbase
Length = 110
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>28223_mne-mir-181b:mirbase
Length = 110
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>33246_bta-mir-181b-1:mirbase
Length = 110
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtggacaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
||||||| |||||||||||||||
Sbjct: 84 acaatgagtgcaactgtggcccc 106
>26485_tgu-mir-181b-1:mirbase
Length = 74
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 3 ggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactgaac 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcacaatgaacattcattgctgtcggtgggtttaactatgtggacaagctcactgaac 60
Query: 63 aatgaatgcaactg 76
||||||||||||||
Sbjct: 61 aatgaatgcaactg 74
>34008_ssc-mir-181b-1:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 3 ggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactgaac 62
|||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 1 ggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactgaac 60
Query: 63 aatgaatgcaactgtggccc 82
||||||||||||||||||||
Sbjct: 61 aatgaatgcaactgtggccc 80
>32764_rno-mir-181b-1:mirbase
Length = 110
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagaaaagctcactga 83
Query: 61 acaatgaatgcaactgtggcccc 83
|||||||||||||||||||||||
Sbjct: 84 acaatgaatgcaactgtggcccc 106
>31894_mmu-mir-181b-1:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 2 aggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactgaa 61
||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||
Sbjct: 1 aggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagaaaagctcactgaa 60
Query: 62 caatgaatgcaactgtggcc 81
||||||||||||||||||||
Sbjct: 61 caatgaatgcaactgtggcc 80
>31511_oan-mir-181b:mirbase
Length = 110
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 15 aaggtcccaatgaacattcattgctgtcggtgggtttaactctgaggacaagctcactga 74
Query: 61 acaatgaatgcaactgtggc 80
|||||||||| |||||||||
Sbjct: 75 acaatgaatggaactgtggc 94
>34612_fru-mir-181b-1:mirbase
Length = 87
Score = 115 bits (58), Expect = 5e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 2 aaggtcacaatcaacattcattgctgtcggtgggtttaactgtatggaagagctcactga 61
Query: 61 acaatgaatgcaactgtg 78
|| |||||||||||||||
Sbjct: 62 acgatgaatgcaactgtg 79
>34759_tni-mir-181b-1:mirbase
Length = 87
Score = 115 bits (58), Expect = 5e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 2 aaggtcacaatcaacattcattgctgtcggtgggtttaactgtatggaagagctcactga 61
Query: 61 acaatgaatgcaactgtg 78
|| |||||||||||||||
Sbjct: 62 acgatgaatgcaactgtg 79
>26733_cfa-mir-181b-1:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 13 aacattcattgctgtcggtgggtttaactatgtggacaagctcactgaacaatgaatgca 72
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
Query: 73 ac 74
||
Sbjct: 61 ac 62
>25805_xtr-mir-181b-1:mirbase
Length = 83
Score = 85.7 bits (43), Expect = 4e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
|||||||||||||||||||||||||||||||||||| | || | |||||||| ||||
Sbjct: 1 aaggtcacaatcaacattcattgctgtcggtgggttgagttaagaacacaagctcgctga 60
Query: 61 acaatgaatgcaactgtggcccc 83
|| ||||||||||||||| ||||
Sbjct: 61 acgatgaatgcaactgtgtcccc 83
>34330_dre-mir-181b-1:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/82 (86%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactga 60
||||||| |||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct: 25 aaggtcataatcaacattcattgctgtcggtgggtttagtcttgt--aacagctctctga 82
Query: 61 acaatgaatgcaactgtggccc 82
|||||||||| |||||||||||
Sbjct: 83 acaatgaatgtaactgtggccc 104
>27772_mml-mir-181d:mirbase
Length = 137
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||||||| ||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgttgtcggtgggtt 59
>30870_ppy-mir-181d:mirbase
Length = 136
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||||||| ||||||||||||
Sbjct: 23 aaggtcacaatcaacattcattgttgtcggtgggtt 58
>33249_bta-mir-181d:mirbase
Length = 113
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aaggtcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||||||| ||||||||||||
Sbjct: 23 aaggtcacaatcaacattcattgttgtcggtgggtt 58
>28488_hsa-mir-181d:mirbase
Length = 137
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2 aggtcacaatcaacattcattgctgtcggtgggtt 36
|||||||||||||||||||||| ||||||||||||
Sbjct: 25 aggtcacaatcaacattcattgttgtcggtgggtt 59
>30256_ptr-mir-181d:mirbase
Length = 136
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2 aggtcacaatcaacattcattgctgtcggtgggtt 36
|||||||||||||||||||||| ||||||||||||
Sbjct: 24 aggtcacaatcaacattcattgttgtcggtgggtt 58
>25977_gga-mir-181b-2:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggttt 37
||||||||||||||||||||||||||||||
Sbjct: 11 caatcaacattcattgctgtcggtgggttt 40
>26486_tgu-mir-181b-2:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggttt 37
||||||||||||||||||||||||||||||
Sbjct: 6 caatcaacattcattgctgtcggtgggttt 35
>31512_oan-mir-181c:mirbase
Length = 95
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 gtcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||| |||||||||||||
Sbjct: 10 gtcacaatcaacattcattactgtcggtgggtt 42
>31895_mmu-mir-181b-2:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggtttaactatgtggacaagctcactgaacaatgaatg 70
||||||||||||||||||||||||||| | |||| || | |||||||| |||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggtttga--atgtcaaccaactcactgatcaatgaatg 71
Query: 71 caa 73
|||
Sbjct: 72 caa 74
>34011_ssc-mir-181d:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||| ||||||||||||
Sbjct: 1 tcacaatcaacattcattgttgtcggtgggtt 32
>34012_ssc-mir-181d:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tcacaatcaacattcattgctgtcggtgggtt 36
||||||||||||||||||| ||||||||||||
Sbjct: 1 tcacaatcaacattcattgttgtcggtgggtt 32
>27062_eca-mir-181b:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>27770_mml-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>28486_hsa-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>30254_ptr-mir-181b-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 13 tcaacattcattgctgtcggtgggttt 39
>30868_ppy-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>32765_rno-mir-181b-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 13 tcaacattcattgctgtcggtgggttt 39
>33247_bta-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>34009_ssc-mir-181b-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcaacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||||
Sbjct: 11 tcaacattcattgctgtcggtgggttt 37
>32767_rno-mir-181d:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 ggtcacaatcaacattcattgctgtcggtgggtt 36
||||||||| ||||||||||| ||||||||||||
Sbjct: 1 ggtcacaattaacattcattgttgtcggtgggtt 34
>34331_dre-mir-181b-2:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggttt 37
|||| |||||||||||||||||||||||||
Sbjct: 11 caataaacattcattgctgtcggtgggttt 40
>34613_fru-mir-181b-2:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggttt 37
|||| |||||||||||||||||||||||||
Sbjct: 6 caataaacattcattgctgtcggtgggttt 35
>34760_tni-mir-181b-2:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggttt 37
|||| |||||||||||||||||||||||||
Sbjct: 6 caataaacattcattgctgtcggtgggttt 35
>25806_xtr-mir-181b-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 caatcaacattcattgctgtcggtgggtt 36
|||| ||||||||||||||||||||||||
Sbjct: 9 caataaacattcattgctgtcggtgggtt 37
>26734_cfa-mir-181b-2:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 aacattcattgctgtcggtgggttt 37
|||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggttt 25
>34332_dre-mir-181c:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 acattcattgctgtcggtgggttt 37
||||||||||||||||||||||||
Sbjct: 13 acattcattgctgtcggtgggttt 36
>31897_mmu-mir-181d:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 acaatcaacattcattgctgtcggtgggtt 36
||||| ||||||||||| ||||||||||||
Sbjct: 1 acaattaacattcattgttgtcggtgggtt 30
>26736_cfa-mir-181d:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 aacattcattgctgtcggtgggtt 36
||||||||||| ||||||||||||
Sbjct: 1 aacattcattgttgtcggtgggtt 24
