miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>25906_gga-mir-22:mirbase
          Length = 100

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 70

                              
Query: 61 gttgaagaactgttgaatgt 80
          ||||||||||||||||||||
Sbjct: 71 gttgaagaactgttgaatgt 90




>34222_dre-mir-22a:mirbase
          Length = 86

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||||||||||||| ||||||||||||||||||| | ||  ||||||||||||||| |||
Sbjct: 9  gcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctga 68

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 69 agaactgttg 78




>25712_xtr-mir-22:mirbase
          Length = 92

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 66/71 (92%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                      
Query: 8  agcagttcttcagtggcaagctttatgtccttc-tctagtagctaaagctgccagttgaa 66
          ||||||||||||||||||||||||||||  ||| ||| || |||||||||||||||||||
Sbjct: 14 agcagttcttcagtggcaagctttatgttgttcctct-gt-gctaaagctgccagttgaa 71

                     
Query: 67 gaactgttgaa 77
          |||||||||||
Sbjct: 72 gaactgttgaa 82




>31439_oan-mir-22:mirbase
          Length = 122

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 65/72 (90%), Gaps = 5/72 (6%)
 Strand = Plus / Plus

                                                                      
Query: 7  cagcagttcttcagtggcaagctttatgtcct-tctctagtagctaaagctgccagttga 65
          |||||||||||||||||||||||||| ||||| || |    |||||||||||||||||||
Sbjct: 32 cagcagttcttcagtggcaagctttacgtcctgtccc----agctaaagctgccagttga 87

                      
Query: 66 agaactgttgaa 77
          ||||||||||||
Sbjct: 88 agaactgttgaa 99




>34555_fru-mir-22a:mirbase
          Length = 86

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                      
Query: 7  cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
          ||||||||||||| ||||||||||||||||||  |  |  ||||||||||||||| ||||
Sbjct: 10 cagcagttcttcactggcaagctttatgtcctcgtgcaacagctaaagctgccagctgaa 69

                   
Query: 67 gaactgttg 75
          |||||||||
Sbjct: 70 gaactgttg 78




>26958_eca-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>27489_age-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>27549_lla-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>27664_mml-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>28181_mne-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>28373_hsa-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>30053_ppa-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>30160_ptr-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>30765_ppy-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>31402_lca-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>31788_mmu-mir-22:mirbase
          Length = 95

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 71 agaactgttg 80




>32672_rno-mir-22:mirbase
          Length = 95

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 71 agaactgttg 80




>33142_bta-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>33143_bta-mir-22:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>33790_bta-mir-3600:mirbase
          Length = 81

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   | ||   |||||||||||||||||
Sbjct: 74 gcagtagttcttcagtggcaagctttatgtcctgacccag---ctaaagctgccagttga 18

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 17 agaactgttg 8




>33924_ssc-mir-22:mirbase
          Length = 80

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 6  gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 62

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 63 agaactgttg 72




>33925_ssc-mir-22:mirbase
          Length = 80

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 6  gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 62

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 63 agaactgttg 72




>26636_cfa-mir-22:mirbase
          Length = 60

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                      
Query: 11 agttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaagaac 70
          ||||||||||||||||||||||||||||   |    ||||||||||||||||||||||||
Sbjct: 1  agttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttgaagaac 57

             
Query: 71 tgt 73
          |||
Sbjct: 58 tgt 60




>34703_tni-mir-22a:mirbase
          Length = 86

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                      
Query: 7  cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
          ||||||||||||| ||||||||||||||||||  |  |   |||||||||||||| ||||
Sbjct: 10 cagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaa 69

                   
Query: 67 gaactgttg 75
          |||||||||
Sbjct: 70 gaactgttg 78




>27597_sla-mir-22:mirbase
          Length = 85

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
          |||| ||||||||||||||||||||||||||||   |     ||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---ccgctaaagctgccagttga 66

                    
Query: 66 agaactgttg 75
          ||||||||||
Sbjct: 67 agaactgttg 76




>27342_mdo-mir-22:mirbase
          Length = 81

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 7  cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
          |||||||||||||||||| |||||||||| ||| ||    ||||||||||||||||||||
Sbjct: 9  cagcagttcttcagtggcgagctttatgt-cttgtc--ccagctaaagctgccagttgaa 65

                
Query: 67 gaactg 72
          ||||||
Sbjct: 66 gaactg 71




>34556_fru-mir-22b:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 48 gctaaagctgccagttgaagaactgttg 75
          ||||||||||||||||||||| ||||||
Sbjct: 51 gctaaagctgccagttgaagagctgttg 78



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 12 gttcttcagtggcaagctttatgtcct 38
          |||||||| |||| |||||||||||||
Sbjct: 15 gttcttcactggctagctttatgtcct 41




>34704_tni-mir-22b:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 48 gctaaagctgccagttgaagaactgttg 75
          ||||||||||||||||||||| ||||||
Sbjct: 52 gctaaagctgccagttgaagagctgttg 79



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 12 gttcttcagtggcaagctttatgtcct 38
          |||||||| |||| |||||||||||||
Sbjct: 15 gttcttcactggctagctttatgtcct 41




>34223_dre-mir-22b:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 taaagctgccagttgaagaactgttg 75
          ||||||||||||||||||| ||||||
Sbjct: 49 taaagctgccagttgaagagctgttg 74




>25441_pma-mir-22b:mirbase
          Length = 81

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 49 ctaaagctgccagttgaaga 68
          ||||||||||||||||||||
Sbjct: 50 ctaaagctgccagttgaaga 69




>25440_pma-mir-22a:mirbase
          Length = 96

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 50 taaagctgccagttgaaga 68
          |||||||||||||||||||
Sbjct: 58 taaagctgccagttgaaga 76