miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25906_gga-mir-22:mirbase
Length = 100
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 70
Query: 61 gttgaagaactgttgaatgt 80
||||||||||||||||||||
Sbjct: 71 gttgaagaactgttgaatgt 90
>34222_dre-mir-22a:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||| |||
Sbjct: 9 gcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctga 68
Query: 66 agaactgttg 75
||||||||||
Sbjct: 69 agaactgttg 78
>25712_xtr-mir-22:mirbase
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 66/71 (92%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 8 agcagttcttcagtggcaagctttatgtccttc-tctagtagctaaagctgccagttgaa 66
|||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||
Sbjct: 14 agcagttcttcagtggcaagctttatgttgttcctct-gt-gctaaagctgccagttgaa 71
Query: 67 gaactgttgaa 77
|||||||||||
Sbjct: 72 gaactgttgaa 82
>31439_oan-mir-22:mirbase
Length = 122
Score = 77.8 bits (39), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtcct-tctctagtagctaaagctgccagttga 65
|||||||||||||||||||||||||| ||||| || | |||||||||||||||||||
Sbjct: 32 cagcagttcttcagtggcaagctttacgtcctgtccc----agctaaagctgccagttga 87
Query: 66 agaactgttgaa 77
||||||||||||
Sbjct: 88 agaactgttgaa 99
>34555_fru-mir-22a:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
||||||||||||| |||||||||||||||||| | | ||||||||||||||| ||||
Sbjct: 10 cagcagttcttcactggcaagctttatgtcctcgtgcaacagctaaagctgccagctgaa 69
Query: 67 gaactgttg 75
|||||||||
Sbjct: 70 gaactgttg 78
>26958_eca-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>27489_age-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>27549_lla-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>27664_mml-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>28181_mne-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>28373_hsa-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>30053_ppa-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>30160_ptr-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>30765_ppy-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>31402_lca-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>31788_mmu-mir-22:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70
Query: 66 agaactgttg 75
||||||||||
Sbjct: 71 agaactgttg 80
>32672_rno-mir-22:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70
Query: 66 agaactgttg 75
||||||||||
Sbjct: 71 agaactgttg 80
>33142_bta-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>33143_bta-mir-22:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>33790_bta-mir-3600:mirbase
Length = 81
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 74 gcagtagttcttcagtggcaagctttatgtcctgacccag---ctaaagctgccagttga 18
Query: 66 agaactgttg 75
||||||||||
Sbjct: 17 agaactgttg 8
>33924_ssc-mir-22:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 6 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 62
Query: 66 agaactgttg 75
||||||||||
Sbjct: 63 agaactgttg 72
>33925_ssc-mir-22:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 6 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 62
Query: 66 agaactgttg 75
||||||||||
Sbjct: 63 agaactgttg 72
>26636_cfa-mir-22:mirbase
Length = 60
Score = 65.9 bits (33), Expect = 4e-12
Identities = 56/63 (88%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 11 agttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaagaac 70
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 agttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttgaagaac 57
Query: 71 tgt 73
|||
Sbjct: 58 tgt 60
>34703_tni-mir-22a:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
||||||||||||| |||||||||||||||||| | | |||||||||||||| ||||
Sbjct: 10 cagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaa 69
Query: 67 gaactgttg 75
|||||||||
Sbjct: 70 gaactgttg 78
>27597_sla-mir-22:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---ccgctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>27342_mdo-mir-22:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
|||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||
Sbjct: 9 cagcagttcttcagtggcgagctttatgt-cttgtc--ccagctaaagctgccagttgaa 65
Query: 67 gaactg 72
||||||
Sbjct: 66 gaactg 71
>34556_fru-mir-22b:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctaaagctgccagttgaagaactgttg 75
||||||||||||||||||||| ||||||
Sbjct: 51 gctaaagctgccagttgaagagctgttg 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 12 gttcttcagtggcaagctttatgtcct 38
|||||||| |||| |||||||||||||
Sbjct: 15 gttcttcactggctagctttatgtcct 41
>34704_tni-mir-22b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctaaagctgccagttgaagaactgttg 75
||||||||||||||||||||| ||||||
Sbjct: 52 gctaaagctgccagttgaagagctgttg 79
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 12 gttcttcagtggcaagctttatgtcct 38
|||||||| |||| |||||||||||||
Sbjct: 15 gttcttcactggctagctttatgtcct 41
>34223_dre-mir-22b:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 taaagctgccagttgaagaactgttg 75
||||||||||||||||||| ||||||
Sbjct: 49 taaagctgccagttgaagagctgttg 74
>25441_pma-mir-22b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 ctaaagctgccagttgaaga 68
||||||||||||||||||||
Sbjct: 50 ctaaagctgccagttgaaga 69
>25440_pma-mir-22a:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 taaagctgccagttgaaga 68
|||||||||||||||||||
Sbjct: 58 taaagctgccagttgaaga 76