miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25873_gga-let-7d:mirbase
Length = 103
Score = 204 bits (103), Expect = 1e-53
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 7 attgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcaca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcaca 60
Query: 67 aggaggtaactatacaacctgctgcctttcttagggctttatt 109
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggaggtaactatacaacctgctgcctttcttagggctttatt 103
>27322_mdo-let-7d:mirbase
Length = 106
Score = 172 bits (87), Expect = 4e-44
Identities = 99/103 (96%)
Strand = Plus / Plus
Query: 9 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 68
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 3 tgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaag 62
Query: 69 gaggtaactatacaacctgctgcctttcttagggctttattat 111
||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 63 gagttaactatacaacctgctgcctttcttagggctctattat 105
>26382_tgu-let-7d:mirbase
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 12 gctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggag 71
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
Query: 72 gtaactatacaacctgctgcctttcttagggc 103
||||||||||||||||||||||||||||||||
Sbjct: 61 gtaactatacaacctgctgcctttcttagggc 92
>31411_oan-let-7d:mirbase
Length = 116
Score = 165 bits (83), Expect = 9e-42
Identities = 98/103 (95%)
Strand = Plus / Plus
Query: 9 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 68
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct: 11 tgggctcctaggaagaggtagtaggttgcatagttttagggcagtgattttgctcataag 70
Query: 69 gaggtaactatacaacctgctgcctttcttagggctttattat 111
| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gtgttaactatacaacctgctgcctttcttagggctttattat 113
>27634_mml-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 15 cctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggta 74
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 75 actatacaacctgctgcctttcttagg 101
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>28344_hsa-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 15 cctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggta 74
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 75 actatacaacctgctgcctttcttagg 101
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30736_ppy-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 15 cctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggta 74
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 75 actatacaacctgctgcctttcttagg 101
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>32643_rno-let-7d:mirbase
Length = 98
Score = 149 bits (75), Expect = 5e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 9 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 68
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
Query: 69 gaggtaactatacaacctgctgcctttcttagggc 103
||| ||||||||| |||||||||||||||||||||
Sbjct: 61 gagttaactatacgacctgctgcctttcttagggc 95
>30131_ptr-let-7d:mirbase
Length = 86
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 16 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 75
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
Query: 76 ctatacaacctgctgcctttcttagg 101
|||||| |||||||||||||||||||
Sbjct: 61 ctatacgacctgctgcctttcttagg 86
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Minus
Query: 10 gggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaagg 69
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct: 95 gggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaagg 36
Query: 70 aggtaactatacaacctgctgcctttcttagggc 103
|| ||||||||| |||||||||||||||||||||
Sbjct: 35 agttaactatacgacctgctgcctttcttagggc 2
>31757_mmu-let-7d:mirbase
Length = 103
Score = 145 bits (73), Expect = 8e-36
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 9 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 68
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 3 tgggttcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 62
Query: 69 gaggtaactatacaacctgctgcctttcttagggctttatt 109
||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 63 gagttaactatacgacctgctgcctttcttagggccttatt 103
>26932_eca-let-7d:mirbase
Length = 87
Score = 141 bits (71), Expect = 1e-34
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 15 cctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggta 74
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagata 60
Query: 75 actatacaacctgctgcctttcttagg 101
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>33113_bta-let-7d:mirbase
Length = 87
Score = 141 bits (71), Expect = 1e-34
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 15 cctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggta 74
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggta 60
Query: 75 actatacaacctgctgcctttcttagg 101
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>25871_gga-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 aggaggtaactatacaacctgctgcctt 94
||||| |||||||||||||| |||||||
Sbjct: 53 aggagataactatacaacctactgcctt 80
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 23 gaggtagtgggttgcatagttttagggc 50
|||||||| ||||| |||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttagggc 39
>26379_tgu-let-7b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 aggaggtaactatacaacctgctgcctt 94
||||| |||||||||||||| |||||||
Sbjct: 58 aggagataactatacaacctactgcctt 85
>34171_dre-let-7b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 aggaggtaactatacaacctgctgcctt 94
||||| |||||||||||||| |||||||
Sbjct: 57 aggagttaactatacaacctactgcctt 84
>34528_fru-let-7b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 aggaggtaactatacaacctgctgcctt 94
||||| |||||||||||||| |||||||
Sbjct: 52 aggagctaactatacaacctactgcctt 79
>34676_tni-let-7b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 aggaggtaactatacaacctgctgcctt 94
||||| |||||||||||||| |||||||
Sbjct: 52 aggagctaactatacaacctactgcctt 79