miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26010_gga-mir-221:mirbase
Length = 99
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tgtccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgtccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaac 63
Query: 61 agctacattgtctgctgggtttccagctgcctggaa 96
||||||||||||||||||||||||||||||||||||
Sbjct: 64 agctacattgtctgctgggtttccagctgcctggaa 99
>31951_mmu-mir-221:mirbase
Length = 95
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacag 61
Query: 63 ctacattgtctgctgggtttccagctgcctggaa 96
||||||||||||||||||||| ||| |||||||
Sbjct: 62 ctacattgtctgctgggtttcaggctacctggaa 95
>32817_rno-mir-221:mirbase
Length = 109
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaa 96
||||||||||||||||||||| ||| |||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaa 100
>26517_tgu-mir-221:mirbase
Length = 73
Score = 145 bits (73), Expect = 7e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
Query: 81 ttccagctgcctg 93
|||||||||||||
Sbjct: 61 ttccagctgcctg 73
>27819_mml-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>28336_ggo-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>28542_hsa-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>30123_ppa-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>30300_ptr-mir-221:mirbase
Length = 109
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>30916_ppy-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>31541_oan-mir-221:mirbase
Length = 93
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 5 caggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacagct 64
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
Query: 65 acattgtctgctgggtttccagctgcctgga 95
||||||||||||||||||| |||| ||||||
Sbjct: 63 acattgtctgctgggtttcaagctacctgga 93
>33301_bta-mir-221:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 tccaggtctagggcatgaacctggcatacaatgtagatttctgtgtttgttgagcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>27106_eca-mir-221:mirbase
Length = 110
Score = 133 bits (67), Expect = 3e-32
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 3 tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7 tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttcttgggcaacag 66
Query: 63 ctacattgtctgctgggtttccagctgcctggaaa 97
||||||||||||||||||||| ||| ||||||||
Sbjct: 67 ctacattgtctgctgggtttcaggctacctggaaa 101
>34046_ssc-mir-221:mirbase
Length = 70
Score = 115 bits (58), Expect = 6e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgaacctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctg 60
Query: 78 ggtttc 83
||||||
Sbjct: 61 ggtttc 66
>27434_mdo-mir-221:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 15 gcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctg 74
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 1 gcatgaacctggcatacaatgtagaattctgtgtttattaagtaacagctacattgtctg 60
Query: 75 ctgggtttc 83
|||||||||
Sbjct: 61 ctgggtttc 69
>26782_cfa-mir-221:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
Query: 81 tt 82
||
Sbjct: 61 tt 62
>25840_xtr-mir-221:mirbase
Length = 93
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 19 acctggcatacaatgtagaaaactgtgtttgcaaagcaacagctacattgtctgctgggt 78
Query: 81 ttc 83
|||
Sbjct: 79 ttc 81
>34381_dre-mir-221:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 5 tgaacctggcatacaatgtagatttctgtgtggtactatctacagctacattgtctgctg 64
Query: 78 ggtttc 83
||||||
Sbjct: 65 ggtttc 70
>34645_fru-mir-221:mirbase
Length = 77
Score = 67.9 bits (34), Expect = 1e-12
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 75
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
Query: 76 tgggtttcc 84
|||||||||
Sbjct: 62 tgggtttcc 70
>34793_tni-mir-221:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 5e-12
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 75
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
Query: 76 tgggtttc 83
||||||||
Sbjct: 62 tgggtttc 69
>25534_pma-mir-221:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 gcaacagctacattgtctgctgggtt 81
||||||||||||||||||||||||||
Sbjct: 46 gcaacagctacattgtctgctgggtt 71