miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26010_gga-mir-221:mirbase
          Length = 99

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  tgtccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaac 63

                                              
Query: 61 agctacattgtctgctgggtttccagctgcctggaa 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 64 agctacattgtctgctgggtttccagctgcctggaa 99




>31951_mmu-mir-221:mirbase
          Length = 95

 Score =  147 bits (74), Expect = 2e-36
 Identities = 89/94 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
          ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2  tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacag 61

                                            
Query: 63 ctacattgtctgctgggtttccagctgcctggaa 96
          |||||||||||||||||||||  ||| |||||||
Sbjct: 62 ctacattgtctgctgggtttcaggctacctggaa 95




>32817_rno-mir-221:mirbase
          Length = 109

 Score =  147 bits (74), Expect = 2e-36
 Identities = 89/94 (94%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacag 66

                                             
Query: 63  ctacattgtctgctgggtttccagctgcctggaa 96
           |||||||||||||||||||||  ||| |||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaa 100




>26517_tgu-mir-221:mirbase
          Length = 73

 Score =  145 bits (73), Expect = 7e-36
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60

                       
Query: 81 ttccagctgcctg 93
          |||||||||||||
Sbjct: 61 ttccagctgcctg 73




>27819_mml-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>28336_ggo-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>28542_hsa-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>30123_ppa-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>30300_ptr-mir-221:mirbase
          Length = 109

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>30916_ppy-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>31541_oan-mir-221:mirbase
          Length = 93

 Score =  141 bits (71), Expect = 1e-34
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                      
Query: 5  caggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacagct 64
          |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 3  caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62

                                         
Query: 65 acattgtctgctgggtttccagctgcctgga 95
          ||||||||||||||||||| |||| ||||||
Sbjct: 63 acattgtctgctgggtttcaagctacctgga 93




>33301_bta-mir-221:mirbase
          Length = 110

 Score =  141 bits (71), Expect = 1e-34
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7   tccaggtctagggcatgaacctggcatacaatgtagatttctgtgtttgttgagcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>27106_eca-mir-221:mirbase
          Length = 110

 Score =  133 bits (67), Expect = 3e-32
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccaggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacag 62
           ||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||
Sbjct: 7   tccaggtctggggcatgaacctggcatacaatgtagatttctgtgtttcttgggcaacag 66

                                              
Query: 63  ctacattgtctgctgggtttccagctgcctggaaa 97
           |||||||||||||||||||||  ||| ||||||||
Sbjct: 67  ctacattgtctgctgggtttcaggctacctggaaa 101




>34046_ssc-mir-221:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 6e-27
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
          ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 1  tgaacctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctg 60

                
Query: 78 ggtttc 83
          ||||||
Sbjct: 61 ggtttc 66




>27434_mdo-mir-221:mirbase
          Length = 74

 Score =  113 bits (57), Expect = 2e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 15 gcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctg 74
          ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 1  gcatgaacctggcatacaatgtagaattctgtgtttattaagtaacagctacattgtctg 60

                   
Query: 75 ctgggtttc 83
          |||||||||
Sbjct: 61 ctgggtttc 69




>26782_cfa-mir-221:mirbase
          Length = 62

 Score =  107 bits (54), Expect = 1e-24
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
          |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 1  acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60

            
Query: 81 tt 82
          ||
Sbjct: 61 tt 62




>25840_xtr-mir-221:mirbase
          Length = 93

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                      
Query: 21 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 80
          |||||||||||||||||||   |||||||||  |||||||||||||||||||||||||||
Sbjct: 19 acctggcatacaatgtagaaaactgtgtttgcaaagcaacagctacattgtctgctgggt 78

             
Query: 81 ttc 83
          |||
Sbjct: 79 ttc 81




>34381_dre-mir-221:mirbase
          Length = 93

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
          |||||||||||||||||||||||||||||||      | | |||||||||||||||||||
Sbjct: 5  tgaacctggcatacaatgtagatttctgtgtggtactatctacagctacattgtctgctg 64

                
Query: 78 ggtttc 83
          ||||||
Sbjct: 65 ggtttc 70




>34645_fru-mir-221:mirbase
          Length = 77

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 62/69 (89%), Gaps = 3/69 (4%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 75
          |||||||||||||||||||||||||||||||  |||  |  | |||||||||||||||||
Sbjct: 3  tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61

                   
Query: 76 tgggtttcc 84
          |||||||||
Sbjct: 62 tgggtttcc 70




>34793_tni-mir-221:mirbase
          Length = 69

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 61/68 (89%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 75
          |||||||||||||||||||||||||||||||  |||  |  | |||||||||||||||||
Sbjct: 3  tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61

                  
Query: 76 tgggtttc 83
          ||||||||
Sbjct: 62 tgggtttc 69




>25534_pma-mir-221:mirbase
          Length = 80

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 56 gcaacagctacattgtctgctgggtt 81
          ||||||||||||||||||||||||||
Sbjct: 46 gcaacagctacattgtctgctgggtt 71