miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39548_ppt-MIR902b:mirbase
          Length = 223

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcctctagcctatgatgcagattcttcatctgtttgttatcgttctcatggtgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ccttcctctagcctatgatgcagattcttcatctgtttgttatcgttctcatggtgtaca 144

                                               
Query: 61  taacagacgaaggtctgcatcatagccaagaggaag 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 145 taacagacgaaggtctgcatcatagccaagaggaag 180




>39547_ppt-MIR902b:mirbase
          Length = 223

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcctctagcctatgatgcagattcttcatctgtttgttatcgttctcatggtgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ccttcctctagcctatgatgcagattcttcatctgtttgttatcgttctcatggtgtaca 144

                                               
Query: 61  taacagacgaaggtctgcatcatagccaagaggaag 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 145 taacagacgaaggtctgcatcatagccaagaggaag 180




>39546_ppt-MIR902a:mirbase
          Length = 223

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 60  ataacagacgaaggtctgcatcatagccaag 90
           |||||||||||||||||||||||||||||||
Sbjct: 144 ataacagacgaaggtctgcatcatagccaag 174




>39545_ppt-MIR902a:mirbase
          Length = 223

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 60  ataacagacgaaggtctgcatcatagccaag 90
           |||||||||||||||||||||||||||||||
Sbjct: 144 ataacagacgaaggtctgcatcatagccaag 174




>39554_ppt-MIR902e:mirbase
          Length = 133

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  ccttcctctagcctatgatgcagattcttcatctgttt 38
          |||||| |||| ||||||||||||||||||||||||||
Sbjct: 21 ccttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 64  cagacgaaggtctgcatcatagccaagaggaag 96
           |||||||||||||||||||||| ||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaag 113




>39553_ppt-MIR902e:mirbase
          Length = 133

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  ccttcctctagcctatgatgcagattcttcatctgttt 38
          |||||| |||| ||||||||||||||||||||||||||
Sbjct: 21 ccttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 64  cagacgaaggtctgcatcatagccaagaggaag 96
           |||||||||||||||||||||| ||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaag 113




>39558_ppt-MIR902g:mirbase
          Length = 141

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 2  cttcctctagcctatgatgcagattcttcatctgttt 38
          ||||| |||| ||||||||||||||||||||||||||
Sbjct: 22 cttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 63  acagacgaaggtctgcatcatagccaagaggaa 95
           ||||||||||||||||||||||| |||||||||
Sbjct: 88  acagacgaaggtctgcatcatagtcaagaggaa 120




>39557_ppt-MIR902g:mirbase
          Length = 141

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 2  cttcctctagcctatgatgcagattcttcatctgttt 38
          ||||| |||| ||||||||||||||||||||||||||
Sbjct: 22 cttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 63  acagacgaaggtctgcatcatagccaagaggaa 95
           ||||||||||||||||||||||| |||||||||
Sbjct: 88  acagacgaaggtctgcatcatagtcaagaggaa 120




>39550_ppt-MIR902c:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 7  tctagcctatgatgcagattcttcatctgtt 37
          |||||| ||||||||||||||||||||||||
Sbjct: 28 tctagcgtatgatgcagattcttcatctgtt 58



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 64  cagacgaaggtctgcatcatagccaag 90
           |||||||||||||||||||||| ||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaag 108




>39549_ppt-MIR902c:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 7  tctagcctatgatgcagattcttcatctgtt 37
          |||||| ||||||||||||||||||||||||
Sbjct: 28 tctagcgtatgatgcagattcttcatctgtt 58



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 64  cagacgaaggtctgcatcatagccaag 90
           |||||||||||||||||||||| ||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaag 108




>39556_ppt-MIR902f:mirbase
          Length = 123

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 60  ataacagacgaaggtctgcatcatagccaag 90
           ||||||||||||| ||||||||||| |||||
Sbjct: 71  ataacagacgaagatctgcatcataaccaag 101



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tatgatgcagattcttcatctg 35
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39555_ppt-MIR902f:mirbase
          Length = 123

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 60  ataacagacgaaggtctgcatcatagccaag 90
           ||||||||||||| ||||||||||| |||||
Sbjct: 71  ataacagacgaagatctgcatcataaccaag 101



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tatgatgcagattcttcatctg 35
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39552_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 14 tatgatgcagattcttcatct 34
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 64  cagacgaaggtctgcatcatagccaagaggaag 96
           |||| ||||||||||||| ||||| ||||||||
Sbjct: 81  cagatgaaggtctgcatcgtagccgagaggaag 113




>39551_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 14 tatgatgcagattcttcatct 34
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 64  cagacgaaggtctgcatcatagccaagaggaag 96
           |||| ||||||||||||| ||||| ||||||||
Sbjct: 81  cagatgaaggtctgcatcgtagccgagaggaag 113