miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40777_mtr-MIR2118:mirbase
          Length = 159

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 121 attccacccattcctattatttctattggttcctccctttcc 162
           |||||||||||||||||||||||  || ||||||| ||||||
Sbjct: 104 attccacccattcctattatttccttttgttcctctctttcc 145




>41030_pvu-MIR2118:mirbase
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 121 attccacccattcctattatttctattggttcct 154
           ||||||||||||||||| |||||  |||||||||
Sbjct: 79  attccacccattcctatgatttcctttggttcct 112




>41549_sly-MIR482:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ccaattccacccattcctat 137
           ||||||||||||||||||||
Sbjct: 64  ccaattccacccattcctat 83




>40481_gma-MIR482a:mirbase
          Length = 95

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 117 cccaattccacccattcctattatttct 144
           ||||||||| ||||||||||| ||||||
Sbjct: 66  cccaattccgcccattcctatgatttct 93




>40480_gma-MIR482a:mirbase
          Length = 95

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 117 cccaattccacccattcctattatttct 144
           ||||||||| ||||||||||| ||||||
Sbjct: 66  cccaattccgcccattcctatgatttct 93