miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40707_mtr-MIR393b:mirbase
          Length = 119

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 51/54 (94%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 89  cttaattcccttaat-tctcacaatatttgggatcatgctatccctttggattc 141
           ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 64  cttaatttccttaatatctcataatatttgggatcatgctatccctttggattc 117



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 22 aggcatccaaagggatcgcattgatcccaaatct 55
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  aggcatccaaagggatcgcattgatcccaaatct 34




>40470_gma-MIR393:mirbase
          Length = 120

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaatc 54
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggaggcatccaaagggatcgcattgatcccaaatc 38



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 112 tatttgggatcatgctatccctttggattcctccttt 148
           ||||||||||||||||||||||||||||| |||||||
Sbjct: 84  tatttgggatcatgctatccctttggatttctccttt 120




>40706_mtr-MIR393:mirbase
          Length = 135

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  actgcaactggaggaggcatccaaagggatcgcattgatcc 48
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2  actgcaacttgaggaggcatccaaagggatcgcattgatcc 42



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 115 ttgggatcatgctatccctttggattcctccttt 148
           |||||||||||| ||||||||||||| |||||||
Sbjct: 93  ttgggatcatgccatccctttggatttctccttt 126




>41642_vvi-MIR393b:mirbase
          Length = 83

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaa 52
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggaggcatccaaagggatcgcattgatcccaaa 36



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 ggatcatgctatccctttggattcctcctttgg 150
           |||||||||||||||||||||||||||||||||
Sbjct: 51  ggatcatgctatccctttggattcctcctttgg 83




>41132_tcc-MIR393a:mirbase
          Length = 118

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 73  attttggatcatgctatccctttggattcctcctttggt 111



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 18 gaggaggcatccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcc 42




>41417_ptc-MIR393a:mirbase
          Length = 85

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatcccaa 35



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 113 atttgggatcatgctatccctttggattcctcct 146
           |||| |||||||||||||||||||||||||||||
Sbjct: 52  attttggatcatgctatccctttggattcctcct 85




>41418_ptc-MIR393b:mirbase
          Length = 84

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
          ||||||||||||||||||||||||||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatccc 33



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 113 atttgggatcatgctatccctttggattcctcct 146
           |||| |||||||||||||||||||||||||||||
Sbjct: 51  attttggatcatgctatccctttggattcctcct 84




>42566_sbi-MIR393:mirbase
          Length = 139

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 15 ctggaggaggcatccaaagggatcgcattgatcc 48
          |||||||| |||||||||||||||||||||||||
Sbjct: 8  ctggaggaagcatccaaagggatcgcattgatcc 41




>39866_aly-MIR393b:mirbase
          Length = 169

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatcc 48
          |||||| ||| | |||||||||||||||||||||||||
Sbjct: 2  gcaactagagaaagcatccaaagggatcgcattgatcc 39




>39865_aly-MIR393a:mirbase
          Length = 147

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatcc 48
          |||||| ||||| | |||||||||||||||||||||||
Sbjct: 2  gcaactagaggaaggatccaaagggatcgcattgatcc 39



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 118 ggatcatgctatccctttggattcctcctt 147
           ||||||||||||| |||||||||| |||||
Sbjct: 110 ggatcatgctatctctttggattcatcctt 139




>41997_osa-MIR393:mirbase
          Length = 115

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 gcatccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||||
Sbjct: 8  gcatccaaagggatcgcattgatcc 32




>41774_bdi-MIR393a:mirbase
          Length = 159

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 gcatccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||||
Sbjct: 33 gcatccaaagggatcgcattgatcc 57




>41641_vvi-MIR393a:mirbase
          Length = 126

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 27 tccaaagggatcgcattgatccca 50
          ||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34




>41238_csi-MIR393:mirbase
          Length = 145

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 9  ctgcaactggaggaggcatccaaagggatcgcattgatcc 48
          |||||||| |||||   |||||||||||||||||||||||
Sbjct: 3  ctgcaactagaggataaatccaaagggatcgcattgatcc 42



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 123 atgctatccctttggattcctcctt 147
           ||||||||||| |||||||||||||
Sbjct: 86  atgctatccctctggattcctcctt 110




>40076_ath-MIR393b:mirbase
          Length = 160

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>40075_ath-MIR393a:mirbase
          Length = 133

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 118 ggatcatgctatccctttggattcctcctt 147
           ||||||||||||| |||||||||| |||||
Sbjct: 103 ggatcatgctatctctttggattcatcctt 132




>42787_zma-MIR393b:mirbase
          Length = 108

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 tccaaagggatcgcattgatcc 48
          ||||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatcc 23




>40295_bna-MIR393:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 tccaaagggatcgcattgatcc 48
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>42788_zma-MIR393c:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatc 22




>42786_zma-MIR393a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>42567_sbi-MIR393b:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>41999_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41998_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41775_bdi-MIR393b:mirbase
          Length = 174

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62




>41420_ptc-MIR393d:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41419_ptc-MIR393c:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41133_tcc-MIR393b:mirbase
          Length = 158

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>41054_ghr-MIR393:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>40373_rco-MIR393:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 6  tccaaagggatcgcattgatc 26