miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41071_ghr-MIR2949a:mirbase
          Length = 114

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtcttagtttgcgtcttgacttttgaactggatttgccgacttgaactgcgttgttgatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtcttagtttgcgtcttgacttttgaactggatttgccgacttgaactgcgttgttgatg 60

                                                                 
Query: 65  gtttccaaaacccgagcctgcaaatccagtcaaaagttaaaaccgggctgagat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttccaaaacccgagcctgcaaatccagtcaaaagttaaaaccgggctgagat 114




>41073_ghr-MIR2949c:mirbase
          Length = 182

 Score =  202 bits (102), Expect = 4e-53
 Identities = 118/122 (96%), Gaps = 1/122 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtcttagtttgcgtcttgacttttgaactggatttgccgacttgaactgcgttgtt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 33  tactgtcttagtttgcgtcttgtcttttgaactggatttgccgacttgaactgcgttgtt 92

                                                                       
Query: 61  gatggtttccaaaacccgagcctgcaaatccagtcaaaagttaaaaccgggctgagattt 120
           || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 93  gaaggtttacaaaacccgagcctgcaaatccagtcaaaagtt-aaaccgggctgagattt 151

             
Query: 121 ac 122
           ||
Sbjct: 152 ac 153




>41072_ghr-MIR2949b:mirbase
          Length = 182

 Score =  202 bits (102), Expect = 4e-53
 Identities = 118/122 (96%), Gaps = 1/122 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtcttagtttgcgtcttgacttttgaactggatttgccgacttgaactgcgttgtt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 33  tactgtcttagtttgcgtcttgtcttttgaactggatttgccgacttgaactgcgttgtt 92

                                                                       
Query: 61  gatggtttccaaaacccgagcctgcaaatccagtcaaaagttaaaaccgggctgagattt 120
           || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 93  gaaggtttacaaaacccgagcctgcaaatccagtcaaaagtt-aaaccgggctgagattt 151

             
Query: 121 ac 122
           ||
Sbjct: 152 ac 153