miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26429_tgu-mir-31:mirbase
Length = 109
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
|||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 12 agagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaa 71
Query: 61 catattgccctctttcctgtct 82
||||||| | ||||||||||||
Sbjct: 72 catattgtcatctttcctgtct 93
>27357_mdo-mir-31:mirbase
Length = 87
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 3 agctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaaca 62
|||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 1 agctggagaggaggcaagatgttggcatagctgttgaactgagaacctgctatgccaaca 60
Query: 63 tattgccctctttcctgtct 82
||||||| |||||| |||||
Sbjct: 61 tattgccatctttcttgtct 80
>25922_gga-mir-31:mirbase
Length = 94
Score = 99.6 bits (50), Expect = 3e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
|||||||||| |||||||||||||||||||||||| | | ||| |||||||||||||||
Sbjct: 12 agagctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaa 71
Query: 61 catattgccctctttcctgtct 82
||||||| | ||||||||||||
Sbjct: 72 catattgtcatctttcctgtct 93
>31456_oan-mir-31:mirbase
Length = 136
Score = 99.6 bits (50), Expect = 3e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
|||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 4 agagctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccga 63
Query: 61 catattgccctctttcctgtct 82
||| ||| | |||||| |||||
Sbjct: 64 catgttgtcatctttcttgtct 85
>31812_mmu-mir-31:mirbase
Length = 106
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
|||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
Query: 65 ttgccctctttcctgtct 82
||||| ||||||||||||
Sbjct: 79 ttgccatctttcctgtct 96
>32694_rno-mir-31:mirbase
Length = 106
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
|||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
Query: 65 ttgccctctttcctgtct 82
||||| ||||||||||||
Sbjct: 79 ttgccatctttcctgtct 96
>33042_rno-mir-3554:mirbase
Length = 118
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
|||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 94 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 35
Query: 65 ttgccctctttcctgtct 82
||||| ||||||||||||
Sbjct: 34 ttgccatctttcctgtct 17
>26980_eca-mir-31:mirbase
Length = 67
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
Query: 67 gcc 69
|||
Sbjct: 61 gcc 63
>27687_mml-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>28194_mne-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>28282_ggo-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>28397_hsa-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>30069_ppa-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>30183_ptr-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>30787_ppy-mir-31:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
|||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 67 gccctctttcc 77
||| |||||||
Sbjct: 61 gccatctttcc 71
>33171_bta-mir-31:mirbase
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
|||||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||
Sbjct: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
Query: 65 ttgcc 69
|||||
Sbjct: 76 ttgcc 80
>26659_cfa-mir-31:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 7e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatattgcc 69
|||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgcc 56
>38622_ppc-mir-72:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gaggcaagatgttggcatagctgatg 38
||||||||||||||||||||||||||
Sbjct: 23 gaggcaagatgttggcatagctgatg 48
>38737_cte-mir-31:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgat 37
||||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctgat 44
>25738_xtr-mir-31:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 ggaggcaagatgttggcatagctg 35
||||||||||||||||||||||||
Sbjct: 15 ggaggcaagatgttggcatagctg 38
>34869_sko-mir-31:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 ggaggcaagatgttggcatagctg 35
||||||||||||||||||||||||
Sbjct: 19 ggaggcaagatgttggcatagctg 42
>38856_lgi-mir-31:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctga 43
>38534_crm-mir-72:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctga 43
>38106_bma-mir-72:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 18 aggcaagatgttggcatagctga 40
>38308_cel-mir-72:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctga 39
>34813_spu-mir-31:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctg 35
||||||||||||||||||||||
Sbjct: 19 aggcaagatgttggcatagctg 40
>35182_aae-mir-31:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctga 36
||||||||||||||||||||||
Sbjct: 52 ggcaagatgttggcatagctga 73
>36013_cqu-mir-31:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctga 36
||||||||||||||||||||||
Sbjct: 13 ggcaagatgttggcatagctga 34
>24656_bfl-mir-31:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctg 35
|||||||||||||||||||||
Sbjct: 20 ggcaagatgttggcatagctg 40
>34252_dre-mir-31:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctg 35
|||||||||||||||||||||
Sbjct: 9 ggcaagatgttggcatagctg 29
>35356_ame-mir-31a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgatg 38
||||||||||| |||||||||||||
Sbjct: 27 aggcaagatgtcggcatagctgatg 51
>37575_ngi-mir-31a:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgatg 38
||||||||||| |||||||||||||
Sbjct: 3 aggcaagatgtcggcatagctgatg 27
>37607_nlo-mir-31a:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgatg 38
||||||||||| |||||||||||||
Sbjct: 3 aggcaagatgtcggcatagctgatg 27
>37643_nvi-mir-31a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgatg 38
||||||||||| |||||||||||||
Sbjct: 27 aggcaagatgtcggcatagctgatg 51
>39077_sme-mir-31b-3:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgat 37
|||||||||| |||||||||||||
Sbjct: 3 aggcaagatgctggcatagctgat 26
>39076_sme-mir-31b-2:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgat 37
|||||||||| |||||||||||||
Sbjct: 3 aggcaagatgctggcatagctgat 26
>39075_sme-mir-31b-1:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctgat 37
|||||||||| |||||||||||||
Sbjct: 14 aggcaagatgctggcatagctgat 37
>24814_cin-mir-31:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagct 34
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>25319_csa-mir-31:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagct 34
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>39074_sme-mir-31a:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||| ||||
Sbjct: 19 aggcaagatgttggcataactga 41
>35003_dpu-mir-31:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
||||||||||| |||||||||||
Sbjct: 21 aggcaagatgtcggcatagctga 43
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctgat 37
|||||||||| ||||||||||||
Sbjct: 16 ggcaagatgtcggcatagctgat 38
>37720_tca-mir-31:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
||||||||||| |||||||||||
Sbjct: 11 aggcaagatgtcggcatagctga 33
>37719_tca-mir-31:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
||||||||||| |||||||||||
Sbjct: 11 aggcaagatgtcggcatagctga 33
