miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>25937_gga-mir-122-1:mirbase
          Length = 77

 Score =  117 bits (59), Expect = 2e-27
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||
Sbjct: 3  gagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacacta 62

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 63 aatagctactg 73




>25938_gga-mir-122-2:mirbase
          Length = 77

 Score =  109 bits (55), Expect = 4e-25
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||
Sbjct: 3  gagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacacta 62

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 63 aatagctactg 73




>28426_hsa-mir-122:mirbase
          Length = 85

 Score =  109 bits (55), Expect = 4e-25
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||
Sbjct: 9  gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 68

                         
Query: 76 aatagctactgctag 90
          |||||||||||||||
Sbjct: 69 aatagctactgctag 83




>30814_ppy-mir-122:mirbase
          Length = 85

 Score =  109 bits (55), Expect = 4e-25
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||
Sbjct: 9  gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 68

                         
Query: 76 aatagctactgctag 90
          |||||||||||||||
Sbjct: 69 aatagctactgctag 83




>31478_oan-mir-122:mirbase
          Length = 111

 Score =  109 bits (55), Expect = 4e-25
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||
Sbjct: 23 gagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacacta 82

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 83 aatagctactg 93




>33197_bta-mir-122:mirbase
          Length = 85

 Score =  109 bits (55), Expect = 4e-25
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||
Sbjct: 9  gagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacacta 68

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 69 aatagctactg 79




>33967_ssc-mir-122:mirbase
          Length = 85

 Score =  109 bits (55), Expect = 4e-25
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||
Sbjct: 9  gagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacacta 68

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 69 aatagctactg 79




>31837_mmu-mir-122:mirbase
          Length = 66

 Score =  107 bits (54), Expect = 1e-24
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                      
Query: 17 agctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaa 76
          |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1  agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60

                
Query: 77 atagct 82
          ||||||
Sbjct: 61 atagct 66




>27371_mdo-mir-122:mirbase
          Length = 74

 Score =  101 bits (51), Expect = 9e-23
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||| ||||||||||||||||||||||| |||| ||  |||||||||||||||||||||
Sbjct: 3  gagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacacta 62

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 63 aatagctactg 73




>27714_mml-mir-122a:mirbase
          Length = 85

 Score =  101 bits (51), Expect = 9e-23
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||
Sbjct: 9  gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 68

                         
Query: 76 aatagctactgctag 90
          |||||||||| ||||
Sbjct: 69 aatagctactactag 83




>29379_hsa-mir-3591:mirbase
          Length = 73

 Score =  101 bits (51), Expect = 9e-23
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||
Sbjct: 71 gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 12

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 11 aatagctactg 1




>29380_hsa-mir-3591:mirbase
          Length = 73

 Score =  101 bits (51), Expect = 9e-23
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||
Sbjct: 71 gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 12

                     
Query: 76 aatagctactg 86
          |||||||||||
Sbjct: 11 aatagctactg 1




>30207_ptr-mir-122:mirbase
          Length = 84

 Score =  101 bits (51), Expect = 9e-23
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| || ||    |||||||||||||||||||||
Sbjct: 8  gagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacacta 67

                         
Query: 76 aatagctactgctag 90
          |||||||||||||||
Sbjct: 68 aatagctactgctag 82




>27006_eca-mir-122:mirbase
          Length = 66

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                      
Query: 17 agctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaa 76
          |||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||
Sbjct: 1  agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60

                
Query: 77 atagct 82
          ||||||
Sbjct: 61 atagct 66




>32716_rno-mir-122:mirbase
          Length = 85

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||| ||||||||||||||||||||||| |||||  | ||||||||||| |||||||||
Sbjct: 9  gagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacacta 68

                         
Query: 76 aatagctactgctag 90
          || ||||||||||||
Sbjct: 69 aacagctactgctag 83




>33091_rno-mir-3591:mirbase
          Length = 109

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||| ||||||||||||||||||||||| |||||  | ||||||||||| |||||||||
Sbjct: 88 gagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacacta 29

                         
Query: 76 aatagctactgctag 90
          || ||||||||||||
Sbjct: 28 aacagctactgctag 14




>34731_tni-mir-122:mirbase
          Length = 66

 Score = 91.7 bits (46), Expect = 9e-20
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                      
Query: 17 agctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaa 76
          |||||||||||||||||||||||||||| |||  ||  ||||||||||||||||||||||
Sbjct: 1  agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60

                
Query: 77 atagct 82
          ||||||
Sbjct: 61 atagct 66




>26449_tgu-mir-122:mirbase
          Length = 72

 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 61/65 (93%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||||
Sbjct: 5  gagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacacta 63

               
Query: 76 aatag 80
          |||||
Sbjct: 64 aatag 68




>34270_dre-mir-122:mirbase
          Length = 76

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 64/69 (92%), Gaps = 5/69 (7%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatc---cgtcaaacgccattatcaca 72
          ||||||||||||||||||||||||||||||||  |||   ||||||||||||||||||||
Sbjct: 5  gagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcaca 62

                   
Query: 73 ctaaatagc 81
          |||||||||
Sbjct: 63 ctaaatagc 71




>26685_cfa-mir-122:mirbase
          Length = 58

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                    
Query: 22 tggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaaata 79
          ||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||
Sbjct: 1  tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58




>34584_fru-mir-122:mirbase
          Length = 66

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                      
Query: 17 agctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaa 76
          |||| ||||||||||||||||||||||| |||  ||  ||||||||||||||||||||||
Sbjct: 1  agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60

                
Query: 77 atagct 82
          ||||||
Sbjct: 61 atagct 66




>25762_xtr-mir-122:mirbase
          Length = 69

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
          ||||| ||||||||||||||||||||||| ||  | |  |||||||||||||||||||||
Sbjct: 1  gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60

           
Query: 76 a 76
          |
Sbjct: 61 a 61