miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41054_ghr-MIR393:mirbase
Length = 139
Score = 276 bits (139), Expect = 5e-75
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 12 ggtggagagctccaaagggatcgcattgatctaatgttgatgatgggcttccttgaaaac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggagagctccaaagggatcgcattgatctaatgttgatgatgggcttccttgaaaac 60
Query: 72 cttaacgaattaattattgatttttgttgattcagttcagtacccattggatcatgcgat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttaacgaattaattattgatttttgttgattcagttcagtacccattggatcatgcgat 120
Query: 132 cccttcggaattttccatc 150
|||||||||||||||||||
Sbjct: 121 cccttcggaattttccatc 139
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 75.8 bits (38), Expect = 9e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 9 gcaggtggagagctccaaagggatcgcattgatctaat 46
||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gcaggtggagagctccaaagggatcgcattgatctaat 45
Score = 75.8 bits (38), Expect = 9e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 93 ttttgttgattcagttcagtacccattggatcatgcgatcccttcggaattttccatcgc 152
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct: 94 ttttgttgattcagttcact---cattggatcatgcaatcccttcggaattttccatcag 150
Query: 153 tagctcta 160
||||||||
Sbjct: 151 tagctcta 158
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 116 cattggatcatgcgatcccttcggaattttcca 148
||||||||||||||||||||| |||||||||||
Sbjct: 75 cattggatcatgcgatcccttaggaattttcca 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatctaatg 47
||||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatctaatg 36
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 118 ttggatcatgcgatcccttcggaattttcca 148
||||||||||||||||||| |||||||||||
Sbjct: 77 ttggatcatgcgatcccttaggaattttcca 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatctaatg 47
||||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatctaatg 36
>40373_rco-MIR393:mirbase
Length = 108
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatctaatgt 48
|||||||||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatctaatgt 32
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 cattggatcatgcgatcccttcggaa 141
||||||||||||||||||||| ||||
Sbjct: 77 cattggatcatgcgatcccttaggaa 102
>42788_zma-MIR393c:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 ctccaaagggatcgcattgatctaa 45
|||||||||||||||||||||||||
Sbjct: 1 ctccaaagggatcgcattgatctaa 25
>42786_zma-MIR393a:mirbase
Length = 126
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 ggtggagagctccaaagggatcgcattgatcta 44
||||||| ||||||||||||||||||||||||
Sbjct: 11 ggtggaggactccaaagggatcgcattgatcta 43
>41999_osa-MIR393b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctccaaagggatcgcattgatct 43
|||||||||||||||||||||||
Sbjct: 26 ctccaaagggatcgcattgatct 48
>41998_osa-MIR393b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctccaaagggatcgcattgatct 43
|||||||||||||||||||||||
Sbjct: 26 ctccaaagggatcgcattgatct 48
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctccaaagggatcgcattgatct 43
|||||||||||||||||||||||
Sbjct: 41 ctccaaagggatcgcattgatct 63
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ggtggagagctccaaagggatcgcattgatc 42
|||||| || |||||||||||||||||||||
Sbjct: 1 ggtggacagttccaaagggatcgcattgatc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 114 cccattggatcatgcgatcccttcggaattttccatc 150
||||||||||||||| ||||||| |||| | ||||||
Sbjct: 88 cccattggatcatgctatcccttaggaactctccatc 124
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatct 43
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatct 22
>42787_zma-MIR393b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatc 22
>42566_sbi-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 20 tccaaagggatcgcattgatc 40
>41997_osa-MIR393:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 36 tccaaagggatcgcattgatc 56
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41238_csi-MIR393:mirbase
Length = 145
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
>40706_mtr-MIR393:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>40470_gma-MIR393:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40295_bna-MIR393:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>40076_ath-MIR393b:mirbase
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40075_ath-MIR393a:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>39866_aly-MIR393b:mirbase
Length = 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38
>39865_aly-MIR393a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38
