miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 90/105 (85%), Gaps = 4/105 (3%)
 Strand = Plus / Plus

                                                                       
Query: 23  tgaagtcactggaggcaacggttcatcgatctcttcctgaatttggctgtggaatcatac 82
           ||||||||||||| ||| ||||||||||||||||||||||| |||  |||| ||  |   
Sbjct: 1   tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-- 57

                                                        
Query: 83  acaaagcaagaatcggtcgataaacctctgcatccagcgctcact 127
            || | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 58  -cagatcaagaatcggtcgataaacctctgcatccagcgttcact 101




>40663_mtr-MIR162:mirbase
          Length = 124

 Score = 75.8 bits (38), Expect = 8e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 92  gaatcggtcgataaacctctgcatccagcgctcacttt 129
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gaatcggtcgataaacctctgcatccagcgctcacttt 117




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 86/99 (86%), Gaps = 5/99 (5%)
 Strand = Plus / Plus

                                                                       
Query: 25  aagtcactggaggcaacggttcatcgatctcttcct--gaatttggctgtggaatcatac 82
           ||||||||||||||| ||||||||||||||||||||  |||||||| |||| ||  |  |
Sbjct: 7   aagtcactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaa--aatc 63

                                                  
Query: 83  acaaagcaagaatcggtcgataaacctctgcatccagcg 121
           ||| | || |||||| |||||||||||||||||||||||
Sbjct: 64  acagaacatgaatcgatcgataaacctctgcatccagcg 102




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 22 gtgaagtcactggaggcaacggttcatcgatctcttcctgaat 64
          |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1  gtgaagtcactggatgcagcggttcatcgatctcttcctgaat 43



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 92  gaatcggtcgataaacctctgcatccagcgctcact 127
           |||||| |||||||||||||||||||||||||||||
Sbjct: 66  gaatcgatcgataaacctctgcatccagcgctcact 101




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagcgct 123
           ||||||||||||| |||||||||||||||||||||||||
Sbjct: 65  aaagcaagaatcgatcgataaacctctgcatccagcgct 103



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 22 gtgaagtcactggaggcaacggttcatcgatc 53
          |||||||| ||||||||| |||||||||||||
Sbjct: 3  gtgaagtcgctggaggcagcggttcatcgatc 34




>41046_ghr-MIR162a:mirbase
          Length = 148

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 84/97 (86%), Gaps = 4/97 (4%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcaacggttcatcgatctcttcct--gaatttggctgtg-gaatcatacaca 85
           ||||||||||| ||||||||||||||||||||  |||||| | |||| |||| | ||| |
Sbjct: 22  cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacaca-a 80

                                                
Query: 86  aagcaagaatcggtcgataaacctctgcatccagcgc 122
           |  || |||||| ||||||||||||||||||||||||
Sbjct: 81  atacatgaatcgatcgataaacctctgcatccagcgc 117




>41220_csi-MIR162:mirbase
          Length = 201

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 92  gaatcggtcgataaacctctgcatccagcgctcact 127
           |||||| |||||||||||||||||||||||||||||
Sbjct: 154 gaatcgatcgataaacctctgcatccagcgctcact 189




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagcgct 123
           |||||| |||||| |||||||||||||||||||||||||
Sbjct: 99  aaagcatgaatcgatcgataaacctctgcatccagcgct 137



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 22 gtgaagtcactggaggcaacggttcatcgatc 53
          |||||||| ||||||||| |||||||||||||
Sbjct: 41 gtgaagtcgctggaggcagcggttcatcgatc 72




>41313_ptc-MIR162a:mirbase
          Length = 107

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 24 gaagtcactggaggcaacggttcatcgatctcttcctg 61
          |||| ||||||||||| |||||||||||||||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatctcttcctg 41



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 99  tcgataaacctctgcatccagcgct 123
           |||||||||||||||||||||||||
Sbjct: 78  tcgataaacctctgcatccagcgct 102




>40342_rco-MIR162:mirbase
          Length = 101

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 28 tcactggaggcaacggttcatcgatctcttcctg 61
          |||||||||||| |||||||||||||||||||||
Sbjct: 1  tcactggaggcagcggttcatcgatctcttcctg 34



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 92  gaatcggtcgataaacctctgcatccagcgct 123
           |||||| |||||||||||||||||||||||||
Sbjct: 69  gaatcgatcgataaacctctgcatccagcgct 100




>41090_tcc-MIR162:mirbase
          Length = 131

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcaacggttcatcgatctcttcctg 61
          ||||||||||| |||||||||||||||||||||
Sbjct: 19 cactggaggcagcggttcatcgatctcttcctg 51




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           ||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           ||||||||||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 24 gaagtcactggaggcaacggttcatcgatctcttcctgaa 63
          |||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tcgataaacctctgcatccag 119
           |||||||||||||||||||||
Sbjct: 78  tcgataaacctctgcatccag 98




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 24 gaagtcactggaggcaacggttcatcgatctcttcctgaa 63
          |||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tcgataaacctctgcatccag 119
           |||||||||||||||||||||
Sbjct: 78  tcgataaacctctgcatccag 98




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 26 agtcactggaggcaacggttcatcgatctcttcctg 61
          |||| ||||||||| |||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagcg 121
           |||||| |||| | |||||||||||||||||||||||
Sbjct: 75  aaagcatgaatagatcgataaacctctgcatccagcg 111




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 26 agtcactggaggcaacggttcatcgatctcttcctg 61
          |||| ||||||||| |||||||||||||||||||||
Sbjct: 63 agtcgctggaggcagcggttcatcgatctcttcctg 98



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagcg 121
           |||||| |||| | |||||||||||||||||||||||
Sbjct: 122 aaagcatgaatagatcgataaacctctgcatccagcg 158




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           |||||| |||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           |||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 83  acaaagcaagaatcggtcgataaacctctgcatccagcgctcacttt 129
           |||| ||| |||||| ||||||| |||||||||||||  ||||||||
Sbjct: 88  acaacgcaggaatcgatcgataagcctctgcatccagatctcacttt 134




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 92  gaatcggtcgataaacctctgcatcc 117
           |||||| |||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129