miRNEST 2.0, an integrative microRNA resource :: BLAST
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 329 bits (166), Expect = 5e-91
Identities = 184/190 (96%)
Strand = Plus / Plus
Query: 4 ttttggagtggccttccttgaagtccaatagagggtcttactgggtagattcatctgctg 63
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1 ttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 60
Query: 64 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 120
Query: 124 catctctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 180
Query: 184 cacctctctc 193
||||||||||
Sbjct: 181 cacctctctc 190
>40338_rco-MIR159:mirbase
Length = 180
Score = 89.7 bits (45), Expect = 7e-19
Identities = 140/169 (82%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||||||||| |||| |||||||||| | ||||||| |||||||||||
Sbjct: 10 tccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggatccca 69
Query: 78 cagccctatcccgtcaatggggggcattggataggcttgtggcttgcatctctcaggagc 137
||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 70 cagccctataagcagagattataattttggataggcttgtggcttgcatatctcaggagc 129
Query: 138 tgcattatccaagt-ttagatccttgtttggattgaagggagctctaca 185
| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 130 ttcatta-ccttgtattagatccttgtttggattgaagggagctctaca 177
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 61.9 bits (31), Expect = 2e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 118 ggcttgcatctctcaggagctgcattatccaagtttagatccttgtttggattgaaggga 177
||||||||| ||||||||||| |||| | || ||||||| || |||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 172
Query: 178 gctctacacct 188
|||||| ||||
Sbjct: 173 gctctaaacct 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||||||| | || | |||||||||| | ||||||| |||| ||||||
Sbjct: 17 tccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaatccca 76
Query: 78 cagccctatc 87
||||||||||
Sbjct: 77 cagccctatc 86
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| |||| | ||||| | |||||||||||
Sbjct: 8 tccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggatccca 67
Query: 78 cag 80
|||
Sbjct: 68 cag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 atccttgtttggattgaagggagctctac 184
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| |||| | ||||| | |||||||||||
Sbjct: 8 tccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggatccca 67
Query: 78 cag 80
|||
Sbjct: 68 cag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 atccttgtttggattgaagggagctctac 184
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>40397_ahy-MIR159:mirbase
Length = 197
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||| |||||||||| |||||||||| | ||||| | |||||||||||
Sbjct: 9 tccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctatggatccca 68
Query: 78 cag 80
|||
Sbjct: 69 cag 71
Score = 56.0 bits (28), Expect = 1e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 154 agatccttgtttggattgaagggagctctaca 185
|||||||| |||||||||||||||||||||||
Sbjct: 148 agatccttatttggattgaagggagctctaca 179
>41922_osa-MIR159f:mirbase
Length = 188
Score = 60.0 bits (30), Expect = 7e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
||||||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 17 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Score = 60.0 bits (30), Expect = 7e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 156
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 157 ggattgaagggagctcta 174
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 17 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Score = 60.0 bits (30), Expect = 7e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 156
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 157 ggattgaagggagctcta 174
>40432_gma-MIR159a:mirbase
Length = 214
Score = 54.0 bits (27), Expect = 4e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| ||| | ||||| | |||||||||||
Sbjct: 27 tccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggatccca 86
Query: 78 cag 80
|||
Sbjct: 87 cag 89
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 158 ccttgtttggattgaagggagctctacacc 187
|||| |||||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctacacc 199
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 152 tttggattgaagggagctctaca 174
>40311_bra-MIR159a:mirbase
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185
>40261_bna-MIR159:mirbase
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183
>39804_aly-MIR159a:mirbase
Length = 222
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 183 tttggattgaagggagctctaca 205
>42700_zma-MIR159k:mirbase
Length = 200
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 177 tgtttggattgaagggagctct 198
>42699_zma-MIR159j:mirbase
Length = 252
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 229 tgtttggattgaagggagctct 250
>42691_zma-MIR159b:mirbase
Length = 221
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 180 tgtttggattgaagggagctct 201
>42634_tae-MIR159a:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>41919_osa-MIR159c:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
|||||||||||||||||| ||| |||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>41883_hvu-MIR159b:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 9 tgtttggattgaagggagctct 30
>41882_hvu-MIR159a:mirbase
Length = 178
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 154 tgtttggattgaagggagctct 175
>41218_csi-MIR159:mirbase
Length = 216
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctac 184
||||||||||||||||||||||
Sbjct: 186 tttggattgaagggagctctac 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gataggcttgtggcttgcat 126
||||||||||||||||||||
Sbjct: 125 gataggcttgtggcttgcat 144
>40016_ath-MIR159a:mirbase
Length = 184
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctac 184
||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctac 184
>42635_tae-MIR159b:mirbase
Length = 255
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 174 ggataggcttatggcttgcatgccccaggagctgcat 210
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 230 tttggattgaagggagctct 249
>41917_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 186 ggataggcttatggcttgcatgccccaggagctgcat 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
>41916_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 186 ggataggcttatggcttgcatgccccaggagctgcat 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
>41528_sly-MIR159:mirbase
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177
>40017_ath-MIR159b:mirbase
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacacctctc 191
|||||||||||||||||||| || |||||
Sbjct: 168 tttggattgaagggagctcttcatctctc 196
