miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 206 bits (104), Expect = 3e-54
Identities = 128/136 (94%)
Strand = Plus / Plus
Query: 2 ttttatgcagggtgctggaaatccttatgcagggtgctggaaatcattacgtacatcgaa 61
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct: 109 ttttatgcagggtgctggaaatccttatgcagggtgctggaaaccattaagtacatctaa 168
Query: 62 tggttttggagtacaactcatagaaacaatttttggatttatgcaaggtgcataaggatt 121
|||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||
Sbjct: 169 tggttttggagtacaactcacagaaaccatttctggatttatgcagggtgcataaggatt 228
Query: 122 tcattatgcaccataa 137
|| |||||||||||||
Sbjct: 229 tccttatgcaccataa 244
Score = 65.9 bits (33), Expect = 7e-12
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataa 137
|||| |||| |||||||||||| |||||||||| ||||| |||||||||||||
Sbjct: 57 aaactatttatggatttatgcagggtgcataagaatttccttatgcaccataa 5
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 161 bits (81), Expect = 2e-40
Identities = 123/137 (89%)
Strand = Plus / Plus
Query: 2 ttttatgcagggtgctggaaatccttatgcagggtgctggaaatcattacgtacatcgaa 61
||||||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||| ||
Sbjct: 109 ttttatgcagggtgctggaaatccttatgcatggtgctgaaaaccatgaagtacatctaa 168
Query: 62 tggttttggagtacaactcatagaaacaatttttggatttatgcaaggtgcataaggatt 121
|||||||| ||||||||||| |||||| |||| | |||||||||| ||||||||||||||
Sbjct: 169 tggttttgaagtacaactcacagaaaccatttctagatttatgcagggtgcataaggatt 228
Query: 122 tcattatgcaccataac 138
| ||||||||||||||
Sbjct: 229 ttcttatgcaccataac 245
Score = 71.9 bits (36), Expect = 1e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 90 atttttggatttatgcaaggtgcataaggatttcattatgcaccataa 137
|||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 52 atttctggatttatgcagggtgcataaggatttccttatgcaccataa 5
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 153 bits (77), Expect = 4e-38
Identities = 104/113 (92%)
Strand = Plus / Plus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||| |||
Sbjct: 111 ttatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaactcacaga 170
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
||| |||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 171 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccataac 223
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 aatggttttggagtacaactca 81
||||||||||||||||||||||
Sbjct: 50 aatggttttggagtacaactca 71
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 ttttatgcagggtgctggaaa 22
|||||||||||||||||||||
Sbjct: 109 ttttatgcagggtgctggaaa 129
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 153 bits (77), Expect = 4e-38
Identities = 123/137 (89%), Gaps = 1/137 (0%)
Strand = Plus / Plus
Query: 2 ttttatgcagggtgctggaaatccttatgcagggtgctggaaatcattacgtacatcgaa 61
||||||| | ||||||| ||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct: 110 ttttatgtaaggtgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaa 169
Query: 62 tggttttggagtacaactcatagaaacaatttttggatttatgcaaggtgcataaggatt 121
|||||||| ||||||||||| |||||| |||| ||||||||||| |||||||||||| |
Sbjct: 170 tggttttgaagtacaactcacagaaaccatttccggatttatgcagggtgcataagga-t 228
Query: 122 tcattatgcaccataac 138
|| ||||||||||||||
Sbjct: 229 tccttatgcaccataac 245
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 137 bits (69), Expect = 2e-33
Identities = 102/113 (90%)
Strand = Plus / Plus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| | |
Sbjct: 121 ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaa 180
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
||| |||| || ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 181 aaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataac 233
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
|||| |||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataac 4
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 60 aatggttttggagtacaactcatagaaacaattt 93
|||||||||||||||||||||| |||||| ||||
Sbjct: 50 aatggttttggagtacaactcacagaaaccattt 83
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 121 bits (61), Expect = 1e-28
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
|||||||| |||||||||| ||||| ||||||| |||| ||||| ||||| ||||| | |
Sbjct: 121 ttatgcagagtgctggaaaccattaagtacatctaatgattttgtagtacgactcacaaa 180
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 181 aaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataac 233
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
|||| |||| |||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataac 4
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 60 aatggttttggagtacaactcatagaaacaattt 93
|||||||||||||||||||||| |||||| ||||
Sbjct: 50 aatggttttggagtacaactcacagaaaccattt 83
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 113 bits (57), Expect = 4e-26
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
|||||||| |||||||||| ||||| |||||| ||||||||||||||||| |||| |||
Sbjct: 115 ttatgcagagtgctggaaaccattaattacatctaatggttttggagtacagctcacaga 56
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
|| |||| |||||||||||| |||||||||| ||||| ||||||||| ||||
Sbjct: 55 aatcatttctggatttatgcagggtgcataagaatttccttatgcaccgtaac 3
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 98 atttatgcaaggtgcataaggatttcattatgcaccataac 138
||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 192 atttatgcagggtgcataaggattttcttatgcaccataac 232
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 60 aatggttttggagtacaactcatagaaacaattt 93
||||||||||||||| |||||| |||||| ||||
Sbjct: 186 aatggttttggagtataactcacagaaaccattt 153
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 109 bits (55), Expect = 6e-25
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||| |
Sbjct: 118 ttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcactaa 177
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgcaccata 136
||| |||| | |||||||||| |||||||||||||||| ||||||||||||
Sbjct: 178 aaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 56.0 bits (28), Expect = 7e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcac 132
|||| |||||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 54 aaaccatttttagatttatgcaag-tgcataaggatttccttatgcac 8
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 tttatgcagggtgctggaaa 22
||||||||||||||||||||
Sbjct: 117 tttatgcagggtgctggaaa 136
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 91.7 bits (46), Expect = 1e-19
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 26 ttatgcagggtgctggaaatcattacgtacatcgaatggttttggagtacaactcataga 85
||||||||||||||| ||| |||| ||||||| |||| ||||| | ||||||||| | |
Sbjct: 112 ttatgcagggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaaa 171
Query: 86 aacaatttttggatttatgcaaggtgcataaggatttcattatgca 131
|| |||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 172 aatcatttctggatttatgcagggtgcataaggatttccttatgca 217
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggattt 122
|||| |||| |||||||||||| ||||||||||||||
Sbjct: 60 aaaccatttctggatttatgcagagtgcataaggattt 23
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 75.8 bits (38), Expect = 8e-15
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 71 agtacaactcatagaaacaatttttggatttatgcaaggtgcataaggatttcattatgc 130
||||||||||| | |||| |||| |||||||||||| |||||||||||||||| ||||||
Sbjct: 71 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 12
Query: 131 ac 132
||
Sbjct: 11 ac 10
Score = 69.9 bits (35), Expect = 5e-13
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 2 ttttatgcagggtgctggaaatccttatgcagggtgctggaaatcattacgtaca 56
||||||||| |||||||||||||||||||||| || ||||||| ||||| |||||
Sbjct: 120 ttttatgcaaggtgctggaaatccttatgcagagtactggaaagcattaagtaca 66
Score = 60.0 bits (30), Expect = 5e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
|||| |||| || ||||||||| |||||||||||||||| |||| |||||||||
Sbjct: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataac 225
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 aatggttttggagtacaact 79
||||||||||||||||||||
Sbjct: 179 aatggttttggagtacaact 160
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 75.8 bits (38), Expect = 8e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 71 agtacaactcatagaaacaatttttggatttatgcaaggtgcataaggatttcattatgc 130
||||||||||| | |||| |||| |||||||||||| |||||||||||||||| ||||||
Sbjct: 158 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 217
Query: 131 ac 132
||
Sbjct: 218 ac 219
Score = 69.9 bits (35), Expect = 5e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2 ttttatgcagggtgctggaaatccttatgcagggtgctggaaatcattacgtaca 56
||||||||| |||||||||||||||||||||| || ||||||| ||||| |||||
Sbjct: 109 ttttatgcaaggtgctggaaatccttatgcagagtactggaaagcattaagtaca 163
Score = 60.0 bits (30), Expect = 5e-10
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 85 aaacaatttttggatttatgcaaggtgcataaggatttcattatgcaccataac 138
|||| |||| || ||||||||| |||||||||||||||| |||| |||||||||
Sbjct: 57 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataac 4
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 aatggttttggagtacaact 79
||||||||||||||||||||
Sbjct: 50 aatggttttggagtacaact 69
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 56.0 bits (28), Expect = 7e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 46 cattacgtacatcgaatggttttggagtacaactcatagaaacaattt 93
||||| ||||||| |||| ||||||||||||||||| |||||| ||||
Sbjct: 36 cattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 ggatttatgcaaggtgcataaggatt 121
||||||||||| ||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggatt 184
