miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40744_mtr-MIR399n:mirbase
Length = 100
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 8 tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct: 3 tcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggctc 62
Query: 68 tagaaattcacttgccaaaggagagccgccct 99
|||||||||||||||||||||||||| |||||
Sbjct: 63 tagaaattcacttgccaaaggagagctgccct 94
>40734_mtr-MIR399d:mirbase
Length = 129
Score = 133 bits (67), Expect = 3e-32
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 1 aaatcaatcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatg 60
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 11 aaatcagtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgacttt 70
Query: 61 gcggctctagaaattcacttgccaaaggagagccgccct 99
||||||| ||||||||||||||||||||||| |||||
Sbjct: 71 aaggctctaaaaattcacttgccaaaggagagctgccct 109
>40732_mtr-MIR399b:mirbase
Length = 112
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 8 tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
|||||||||||||||||||||| | |||||||||||||||||||||||| | | ||||
Sbjct: 1 tcatagggcatgtctctattggtaggtgatatggtgatatttcatttgaattagaggctt 60
Query: 68 tagaaattcacttgccaaaggagagccgccctgtgagcgttt 109
||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 61 cagaaattcacttgccaaaggagagctgccctgtgagtgttt 102
>40745_mtr-MIR399o:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 6e-21
Identities = 81/93 (87%), Gaps = 8/93 (8%)
Strand = Plus / Plus
Query: 8 tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
|||||||||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct: 3 tcatagggcatgtctctattggca--------ggtgatatttcatttgacttagaggctc 54
Query: 68 tagaaattcacttgccaaaggagagccgccctg 100
|||||||||||||||||||||||||| ||||||
Sbjct: 55 tagaaattcacttgccaaaggagagctgccctg 87
>40743_mtr-MIR399m:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 63 ggctctagaaattcacttgccaaaggagagccgccct 99
||||||||||||||||||||||||||||||| |||||
Sbjct: 43 ggctctagaaattcacttgccaaaggagagctgccct 79
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 8 tcatagggcatgtctctattggcaagtgatatggtgatat 47
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 3 tcatagggcatgtctctattggcaggtgatatagtgatat 42
>40386_rco-MIR399d:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 cttgccaaaggagagccgccctgtga 103
|||||||||||||||| |||||||||
Sbjct: 76 cttgccaaaggagagctgccctgtga 101
