miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40744_mtr-MIR399n:mirbase
          Length = 100

 Score =  135 bits (68), Expect = 7e-33
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                      
Query: 8  tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
          |||||||||||||||||||||||| ||||||||||||||||||||||||| |   |||||
Sbjct: 3  tcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggctc 62

                                          
Query: 68 tagaaattcacttgccaaaggagagccgccct 99
          |||||||||||||||||||||||||| |||||
Sbjct: 63 tagaaattcacttgccaaaggagagctgccct 94




>40734_mtr-MIR399d:mirbase
          Length = 129

 Score =  133 bits (67), Expect = 3e-32
 Identities = 91/99 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcaatcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatg 60
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | 
Sbjct: 11  aaatcagtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgacttt 70

                                                  
Query: 61  gcggctctagaaattcacttgccaaaggagagccgccct 99
             ||||||| ||||||||||||||||||||||| |||||
Sbjct: 71  aaggctctaaaaattcacttgccaaaggagagctgccct 109




>40732_mtr-MIR399b:mirbase
          Length = 112

 Score =  123 bits (62), Expect = 3e-29
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
           |||||||||||||||||||||| | ||||||||||||||||||||||||  | | |||| 
Sbjct: 1   tcatagggcatgtctctattggtaggtgatatggtgatatttcatttgaattagaggctt 60

                                                     
Query: 68  tagaaattcacttgccaaaggagagccgccctgtgagcgttt 109
            ||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 61  cagaaattcacttgccaaaggagagctgccctgtgagtgttt 102




>40745_mtr-MIR399o:mirbase
          Length = 92

 Score = 95.6 bits (48), Expect = 6e-21
 Identities = 81/93 (87%), Gaps = 8/93 (8%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcatagggcatgtctctattggcaagtgatatggtgatatttcatttgacatggcggctc 67
           ||||||||||||||||||||||||        |||||||||||||||||| | | |||||
Sbjct: 3   tcatagggcatgtctctattggca--------ggtgatatttcatttgacttagaggctc 54

                                            
Query: 68  tagaaattcacttgccaaaggagagccgccctg 100
           |||||||||||||||||||||||||| ||||||
Sbjct: 55  tagaaattcacttgccaaaggagagctgccctg 87




>40743_mtr-MIR399m:mirbase
          Length = 85

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 63 ggctctagaaattcacttgccaaaggagagccgccct 99
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 43 ggctctagaaattcacttgccaaaggagagctgccct 79



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 8  tcatagggcatgtctctattggcaagtgatatggtgatat 47
          |||||||||||||||||||||||| ||||||| |||||||
Sbjct: 3  tcatagggcatgtctctattggcaggtgatatagtgatat 42




>40386_rco-MIR399d:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 78  cttgccaaaggagagccgccctgtga 103
           |||||||||||||||| |||||||||
Sbjct: 76  cttgccaaaggagagctgccctgtga 101