miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40663_mtr-MIR162:mirbase
Length = 124
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gaagttcgtcactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gaagttcgtcactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgta 69
Query: 61 aaacaaacatgaatcggtcgataaacctctgcatccagcgctcacttt 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaacaaacatgaatcggtcgataaacctctgcatccagcgctcacttt 117
>40437_gma-MIR162:mirbase
Length = 102
Score = 77.8 bits (39), Expect = 1e-15
Identities = 86/100 (86%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctgaatt-ttgtttgtctcgtaaaacaa 66
|||||||||||||||||||||||||||| ||||||||| |||||| | | | ||
Sbjct: 6 gtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaac----atcagaa 61
Query: 67 acatgaatcggtcgataaacctctgcatccagcgctcact 106
||||||||| |||||||||||||||||||||||||||||
Sbjct: 62 ccatgaatcgatcgataaacctctgcatccagcgctcact 101
>41220_csi-MIR162:mirbase
Length = 201
Score = 71.9 bits (36), Expect = 9e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 67 acatgaatcggtcgataaacctctgcatccagcgctcact 106
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgctcact 189
>41578_vvi-MIR162:mirbase
Length = 103
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctgaa 44
|||||||||||||||||||||||||||| ||||||||
Sbjct: 5 gtcactggatgcagcggttcatcgatctcttcctgaa 41
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgctcact 106
|||||||||||||||||||||||||||||| |||||
Sbjct: 66 gaatcggtcgataaacctctgcatccagcgttcact 101
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66
Query: 67 acatgaatcggtcgataaacctctgcatccagcgct 102
||||||| || |||||||||||||||||||||||||
Sbjct: 67 acatgaaccgatcgataaacctctgcatccagcgct 102
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 67 acatgaatcggtcgataaacctctgcatccagcgc 101
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 acatgaatcgatcgataaacctctgcatccagcgc 117
>40342_rco-MIR162:mirbase
Length = 101
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagcgct 102
||||||||| |||||||||||||||||||||||||
Sbjct: 66 catgaatcgatcgataaacctctgcatccagcgct 100
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tcactggatgcagcggttcatcgatctgttcctg 42
|||||||| |||||||||||||||||| ||||||
Sbjct: 1 tcactggaggcagcggttcatcgatctcttcctg 34
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 66 aacatgaatcggtcgataaacctctgcatccagcg 100
||||||||||| |||||||||||||||||||||||
Sbjct: 68 aacatgaatcgatcgataaacctctgcatccagcg 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctg 42
||||||||| |||||||||||||||||| ||||||
Sbjct: 9 gtcactggaggcagcggttcatcgatctcttcctg 43
>39813_aly-MIR162b:mirbase
Length = 184
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagcgct 102
||||||||| |||||||||||||||||||||||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccagcgct 137
>42708_zma-MIR162:mirbase
Length = 130
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>41530_sly-MIR162:mirbase
Length = 99
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>40025_ath-MIR162b:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgct 102
|||||| |||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgct 103
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
>41090_tcc-MIR162:mirbase
Length = 131
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctg 42
||||||| |||||||||||||||||| ||||||
Sbjct: 19 cactggaggcagcggttcatcgatctcttcctg 51
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 67 acatgaatcggtcgataaacctctgcatccag 98
|||||| ||| |||||||||||||||||||||
Sbjct: 80 acatgattcgatcgataaacctctgcatccag 111
>40024_ath-MIR162a:mirbase
Length = 140
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagcg 100
||||||| | |||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ctggatgcagcggttcatcgatctgttcctg 42
||||| |||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
>39812_aly-MIR162a:mirbase
Length = 228
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagcg 100
||||||| | |||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ctggatgcagcggttcatcgatctgttcctg 42
||||| |||||||||||||||||| ||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctg 98
>42502_sbi-MIR162:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
|||||| |||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127
>41929_osa-MIR162a:mirbase
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>41930_osa-MIR162b:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgctcacttt 108
|||||| ||||||| ||||||||||||| ||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccagatctcacttt 134
>41736_bdi-MIR162:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatcc 96
|||||| |||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129
