miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40663_mtr-MIR162:mirbase
          Length = 124

 Score =  214 bits (108), Expect = 1e-56
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagttcgtcactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  gaagttcgtcactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgta 69

                                                           
Query: 61  aaacaaacatgaatcggtcgataaacctctgcatccagcgctcacttt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaacaaacatgaatcggtcgataaacctctgcatccagcgctcacttt 117




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 86/100 (86%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 8   gtcactggatgcagcggttcatcgatctgttcctgaatt-ttgtttgtctcgtaaaacaa 66
           |||||||||||||||||||||||||||| |||||||||  ||||||  |    |  | ||
Sbjct: 6   gtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaac----atcagaa 61

                                                   
Query: 67  acatgaatcggtcgataaacctctgcatccagcgctcact 106
            ||||||||| |||||||||||||||||||||||||||||
Sbjct: 62  ccatgaatcgatcgataaacctctgcatccagcgctcact 101




>41220_csi-MIR162:mirbase
          Length = 201

 Score = 71.9 bits (36), Expect = 9e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 67  acatgaatcggtcgataaacctctgcatccagcgctcact 106
           |||||||||| |||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgctcact 189




>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 8  gtcactggatgcagcggttcatcgatctgttcctgaa 44
          |||||||||||||||||||||||||||| ||||||||
Sbjct: 5  gtcactggatgcagcggttcatcgatctcttcctgaa 41



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 71  gaatcggtcgataaacctctgcatccagcgctcact 106
           |||||||||||||||||||||||||||||| |||||
Sbjct: 66  gaatcggtcgataaacctctgcatccagcgttcact 101




>41313_ptc-MIR162a:mirbase
          Length = 107

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 81/96 (84%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 66
           ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 9   cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66

                                               
Query: 67  acatgaatcggtcgataaacctctgcatccagcgct 102
           ||||||| || |||||||||||||||||||||||||
Sbjct: 67  acatgaaccgatcgataaacctctgcatccagcgct 102




>41046_ghr-MIR162a:mirbase
          Length = 148

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 67  acatgaatcggtcgataaacctctgcatccagcgc 101
           |||||||||| ||||||||||||||||||||||||
Sbjct: 83  acatgaatcgatcgataaacctctgcatccagcgc 117




>40342_rco-MIR162:mirbase
          Length = 101

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 68  catgaatcggtcgataaacctctgcatccagcgct 102
           ||||||||| |||||||||||||||||||||||||
Sbjct: 66  catgaatcgatcgataaacctctgcatccagcgct 100



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 9  tcactggatgcagcggttcatcgatctgttcctg 42
          |||||||| |||||||||||||||||| ||||||
Sbjct: 1  tcactggaggcagcggttcatcgatctcttcctg 34




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 66  aacatgaatcggtcgataaacctctgcatccagcg 100
           ||||||||||| |||||||||||||||||||||||
Sbjct: 68  aacatgaatcgatcgataaacctctgcatccagcg 102



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 8  gtcactggatgcagcggttcatcgatctgttcctg 42
          ||||||||| |||||||||||||||||| ||||||
Sbjct: 9  gtcactggaggcagcggttcatcgatctcttcctg 43




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 68  catgaatcggtcgataaacctctgcatccagcgct 102
           ||||||||| |||||||||||||||||||||||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccagcgct 137




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           ||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 71 gaatcggtcgataaacctctgcatccag 98
          ||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 71  gaatcggtcgataaacctctgcatccagcgct 102
           |||||| |||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 9  cactggaggcagcggttcatcgatcttttcctgaa 43




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 9  cactggaggcagcggttcatcgatcttttcctgaa 43




>41090_tcc-MIR162:mirbase
          Length = 131

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 10 cactggatgcagcggttcatcgatctgttcctg 42
          ||||||| |||||||||||||||||| ||||||
Sbjct: 19 cactggaggcagcggttcatcgatctcttcctg 51



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 67  acatgaatcggtcgataaacctctgcatccag 98
           |||||| ||| |||||||||||||||||||||
Sbjct: 80  acatgattcgatcgataaacctctgcatccag 111




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 68  catgaatcggtcgataaacctctgcatccagcg 100
           ||||||| | |||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 ctggatgcagcggttcatcgatctgttcctg 42
          ||||| |||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 68  catgaatcggtcgataaacctctgcatccagcg 100
           ||||||| | |||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 ctggatgcagcggttcatcgatctgttcctg 42
          ||||| |||||||||||||||||| ||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctg 98




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           |||||| |||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           |||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 71  gaatcggtcgataaacctctgcatccagcgctcacttt 108
           |||||| ||||||| |||||||||||||  ||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccagatctcacttt 134




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 71  gaatcggtcgataaacctctgcatcc 96
           |||||| |||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129