miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41027_pvu-MIR399a:mirbase
          Length = 223

 Score =  111 bits (56), Expect = 1e-25
 Identities = 99/112 (88%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  taagcaaatcagctatagggcttctctttcttggcaggaaattatcatgaccattccatc 78
           |||||||| ||| |||||||||||||||| |||||||||||| | |||||||| | ||| 
Sbjct: 22  taagcaaaccagttatagggcttctctttgttggcaggaaatga-catgaccacttcatg 80

                                                               
Query: 79  atgtgtcttgccaaaggagagttgccctgttgctgttttagcttaatgtgta 130
           |  | |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 81  aaatatcttgccaaaggagagttgccctgttgctgctttagcttaatatgta 132




>41669_vvi-MIR399b:mirbase
          Length = 117

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 79  atgtgtcttgccaaaggagagttgccctgt 108
           ||||| ||||||||||||||||||||||||
Sbjct: 79  atgtgacttgccaaaggagagttgccctgt 108




>41456_ptc-MIR399i:mirbase
          Length = 108

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 81  gtgtcttgccaaaggagagttgccct 106
           ||||||||||||||||||||||||||
Sbjct: 73  gtgtcttgccaaaggagagttgccct 98




>41154_tcc-MIR399i:mirbase
          Length = 157

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 115 cttgccaaaggagagttgccctgt 138




>40746_mtr-MIR399p:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 52  cttgccaaaggagagttgccctgt 75




>40742_mtr-MIR399l:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 52  cttgccaaaggagagttgccctgt 75




>40383_rco-MIR399a:mirbase
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 66  cttgccaaaggagagttgccctgt 89




>40094_ath-MIR399c:mirbase
          Length = 114

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 82  cttgccaaaggagagttgccctgt 105




>39886_aly-MIR399c:mirbase
          Length = 125

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||||
Sbjct: 87  cttgccaaaggagagttgccctgt 110




>42823_zma-MIR399e:mirbase
          Length = 124

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 35 agggcttctctttcttggcagg 56
          ||||||||||||||||||||||
Sbjct: 22 agggcttctctttcttggcagg 43



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||
Sbjct: 85  tgccaaaggagagttgccctgt 106




>42597_sbi-MIR399i:mirbase
          Length = 121

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 35 agggcttctctttcttggcagg 56
          ||||||||||||||||||||||
Sbjct: 22 agggcttctctttcttggcagg 43



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||
Sbjct: 82  tgccaaaggagagttgccctgt 103




>41670_vvi-MIR399c:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||
Sbjct: 52  tgccaaaggagagttgccctgt 73




>41249_csi-MIR399d:mirbase
          Length = 130

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgccaaaggagagttgccctgt 108
           ||||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctgt 121




>42828_zma-MIR399j:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 154 tgccaaaggagagttgccctg 174




>42827_zma-MIR399i:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 70  tgccaaaggagagttgccctg 90




>42592_sbi-MIR399d:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctg 186




>42044_osa-MIR399d:mirbase
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctg 276




>41676_vvi-MIR399i:mirbase
          Length = 122

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  gccaaaggagagttgccctgt 108
           |||||||||||||||||||||
Sbjct: 93  gccaaaggagagttgccctgt 113




>41146_tcc-MIR399a:mirbase
          Length = 136

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  gccaaaggagagttgccctgt 108
           |||||||||||||||||||||
Sbjct: 97  gccaaaggagagttgccctgt 117




>40093_ath-MIR399b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 105 tgccaaaggagagttgccctg 125




>39885_aly-MIR399b:mirbase
          Length = 154

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tgccaaaggagagttgccctg 107
           |||||||||||||||||||||
Sbjct: 106 tgccaaaggagagttgccctg 126




>42050_osa-MIR399j:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  tgccaaaggagagttgccct 106
           ||||||||||||||||||||
Sbjct: 76  tgccaaaggagagttgccct 95




>41548_sly-MIR399:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  tgccaaaggagagttgccct 106
           ||||||||||||||||||||
Sbjct: 51  tgccaaaggagagttgccct 70




>41455_ptc-MIR399h:mirbase
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||||| ||||||
Sbjct: 101 cttgccaaaggagagtttccctgt 124




>41247_csi-MIR399b:mirbase
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  tgccaaaggagagttgccct 106
           ||||||||||||||||||||
Sbjct: 125 tgccaaaggagagttgccct 144




>41192_aqc-MIR399:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  tgccaaaggagagttgccct 106
           ||||||||||||||||||||
Sbjct: 72  tgccaaaggagagttgccct 91




>40732_mtr-MIR399b:mirbase
          Length = 112

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||| ||||||||
Sbjct: 71  cttgccaaaggagagctgccctgt 94




>40386_rco-MIR399d:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  cttgccaaaggagagttgccctgt 108
           ||||||||||||||| ||||||||
Sbjct: 76  cttgccaaaggagagctgccctgt 99