miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40654_mtr-MIR156g:mirbase
          Length = 120

 Score =  238 bits (120), Expect = 8e-64
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggttgttgacagaagatagagggcactaaggatgatatgcatacacatatatatacaaca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggttgttgacagaagatagagggcactaaggatgatatgcatacacatatatatacaaca 60

                                                                       
Query: 67  tggaggaggagcttaattgcatttcatttcctttgtgctctctagacttctgtcatcacc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggaggaggagcttaattgcatttcatttcctttgtgctctctagacttctgtcatcacc 120




>41567_vvi-MIR156g:mirbase
          Length = 103

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 95  tcctttgtgctctctagacttctgtcatcacctca 129
           |||||||||||||||||||||||||||||||||||
Sbjct: 64  tcctttgtgctctctagacttctgtcatcacctca 98



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 7  gttgttgacagaagatagagagcac 31




>39800_aly-MIR157c:mirbase
          Length = 293

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 7   ggttgttgacagaagatagagggcactaaggatgatatgcatacacatatatata 61
           ||||||||||||||||||||| ||||||||||||| |||||  |||||| |||||
Sbjct: 50  ggttgttgacagaagatagagagcactaaggatgacatgcaagcacatacatata 104



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 98  tttgtgctctctagacttctgtcatcacct 127
           ||||||||||||| |||||||||| |||||
Sbjct: 216 tttgtgctctctatacttctgtcaccacct 245




>41295_ptc-MIR156h:mirbase
          Length = 103

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 74  ggagcttaattgcatttcatttcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||| ||| | |||||||||||||||| |||||||||||||||
Sbjct: 48  ggagcttaattgcatctcact-cctttgtgctctctagtcttctgtcatcacct 100



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 10 tgttgacagaagatagagggcactaaggatgatatgcat 48
          |||||||||||||||||| ||||| | ||||| ||||||
Sbjct: 9  tgttgacagaagatagagagcactgacgatgaaatgcat 47




>41294_ptc-MIR156g:mirbase
          Length = 103

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 74  ggagcttaattgcatttcatttcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||| ||| | |||||||||||||||| |||||||||||||||
Sbjct: 48  ggagcttaattgcatctcact-cctttgtgctctctagtcttctgtcatcacct 100



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 7  gttgttgacagaagatagagagcac 31




>40395_ahy-MIR156b:mirbase
          Length = 135

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 8  gttgttgacagaagatagagggcactaaggatgatatgcatacacatatatata 61
          |||||||||||||||||||| |||| || ||||||||||||| | |||||||||
Sbjct: 19 gttgttgacagaagatagagagcacaaaagatgatatgcatatagatatatata 72



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 94  ttcctttgtgctctctagacttctgtcatcac 125
           |||||||||||||||||  |||||||||||||
Sbjct: 85  ttcctttgtgctctctaagcttctgtcatcac 116




>40394_ahy-MIR156b:mirbase
          Length = 135

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 8  gttgttgacagaagatagagggcactaaggatgatatgcatacacatatatata 61
          |||||||||||||||||||| |||| || ||||||||||||| | |||||||||
Sbjct: 19 gttgttgacagaagatagagagcacaaaagatgatatgcatatagatatatata 72



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 94  ttcctttgtgctctctagacttctgtcatcac 125
           |||||||||||||||||  |||||||||||||
Sbjct: 85  ttcctttgtgctctctaagcttctgtcatcac 116




>40260_bna-MIR156c:mirbase
          Length = 155

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 6  aggttgttgacagaagatagagggcactaaggatgatatgca 47
          |||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 12 aggttgttgacagaagatagagagcactaaggatgacatgca 53



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  tttgtgctctctagacttctgtca 121
           ||||||||||||| ||||||||||
Sbjct: 114 tttgtgctctctatacttctgtca 137




>40310_bra-MIR157a:mirbase
          Length = 149

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 9  ggttgttgacagaagatagagagcactaaggatgacatgca 49




>40304_bol-MIR157a:mirbase
          Length = 106

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1  ggttgttgacagaagatagagagcactaaggatgacatgca 41



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  tttgtgctctctagacttctgtca 121
           ||||||||||||| ||||||||||
Sbjct: 78  tttgtgctctctatacttctgtca 101




>40259_bna-MIR156b:mirbase
          Length = 208

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 20 ggttgttgacagaagatagagagcactaaggatgacatgca 60




>40012_ath-MIR157c:mirbase
          Length = 217

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 19 ggttgttgacagaagatagagagcactaaggatgacatgca 59



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 98  tttgtgctctctagacttctgtcatcacct 127
           ||||||||||||| |||||||||| |||||
Sbjct: 165 tttgtgctctctatacttctgtcaccacct 194




>39801_aly-MIR157d:mirbase
          Length = 256

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 32 ggttgctgacagaagatagagagcactaaggatgatatgca 72



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 94  ttcctttgtgctctctagacttctgtcatcacct 127
           ||||| |||||||||||  |||||||||||||||
Sbjct: 184 ttcctatgtgctctctatgcttctgtcatcacct 217




>40428_gma-MIR156d:mirbase
          Length = 151

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                        
Query: 4  taaggttgttgacagaagatagagggcactaaggatgatatgcata 49
          |||||||||||||||||||||||| ||||  | |||||||||||||
Sbjct: 13 taaggttgttgacagaagatagagagcacagatgatgatatgcata 58



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           |||||||||||||||| ||||||||||||||||
Sbjct: 105 tcctttgtgctctctatacttctgtcatcacct 137




>40013_ath-MIR157d:mirbase
          Length = 221

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgca 47
          ||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 18 ggttgctgacagaagatagagagcactaaggatgctatgca 58



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 94  ttcctttgtgctctctagacttctgtcatcacct 127
           ||||| |||||||||||  |||||||||||||||
Sbjct: 166 ttcctatgtgctctctatgcttctgtcatcacct 199




>39798_aly-MIR157a:mirbase
          Length = 123

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||||| |||||||||||||||
Sbjct: 79  tcctttgtgctctctagccttctgtcatcacct 111




>40011_ath-MIR157b:mirbase
          Length = 132

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 95  tcctttgtgctctctagacttctgtcatcacc 126
           ||||||||||||||||| ||||||||||||||
Sbjct: 82  tcctttgtgctctctagccttctgtcatcacc 113




>40010_ath-MIR157a:mirbase
          Length = 98

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 95  tcctttgtgctctctagacttctgtcatcacc 126
           ||||||||||||||||| ||||||||||||||
Sbjct: 67  tcctttgtgctctctagccttctgtcatcacc 98




>41525_sly-MIR156a:mirbase
          Length = 100

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 12 ttgacagaagatagagggcactaaggatgatatgc 46
          |||||||||||||||| ||||||| ||||||||||
Sbjct: 1  ttgacagaagatagagagcactaatgatgatatgc 35




>40652_mtr-MIR156e:mirbase
          Length = 172

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                 
Query: 7  ggttgttgacagaagatagagggcactaaggatgatatgcatacacatatatata 61
          ||||||||||||||||||||| ||||  | ||||||||||||  | |||||||||
Sbjct: 1  ggttgttgacagaagatagagagcacagatgatgatatgcatttatatatatata 55



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  tcctttgtgctctctagacttctgtcatcacc 126
           ||||||||||||||||  ||||||||||||||
Sbjct: 141 tcctttgtgctctctatgcttctgtcatcacc 172




>40429_gma-MIR156e:mirbase
          Length = 124

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 95  tcctttgtgctctctagacttctgtcatca 124
           ||||||||||||||||| ||||||||||||
Sbjct: 78  tcctttgtgctctctagtcttctgtcatca 107



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 10 tgttgacagaagatagagggcactaaggatgatatgcat 48
          |||||||||||||||||| ||||| | ||||| ||||||
Sbjct: 19 tgttgacagaagatagagagcactgatgatgaaatgcat 57




>40336_rco-MIR156g:mirbase
          Length = 97

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 95  tcctttgtgctctctagacttctgtcatca 124
           ||||||||||||||||| ||||||||||||
Sbjct: 63  tcctttgtgctctctagtcttctgtcatca 92



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 8  gttgttgacagaagatagagggcactaaggatgatatgcat 48
          |||||||||||||||||||| ||||| | ||||| ||||||
Sbjct: 2  gttgttgacagaagatagagagcactgacgatgaaatgcat 42




>41569_vvi-MIR156i:mirbase
          Length = 103

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||||  |||||||||||||||
Sbjct: 64  tcctttgtgctctctattcttctgtcatcacct 96



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 7  gttgttgacagaagatagagagcac 31




>41084_tcc-MIR156e:mirbase
          Length = 123

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||||  |||||||||||||||
Sbjct: 74  tcctttgtgctctctattcttctgtcatcacct 106



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 17 gttgttgacagaagatagagagcac 41




>40337_rco-MIR156h:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||||  |||||||||||||||
Sbjct: 63  tcctttgtgctctctatgcttctgtcatcacct 95



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 2  gttgttgacagaagatagagagcac 26




>41297_ptc-MIR156j:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 8  gttgttgacagaagatagagggcactaaggatgatatgca 47
          |||||||||||||||||||| ||||  | |||||||||||
Sbjct: 7  gttgttgacagaagatagagagcacagatgatgatatgca 46



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 95  tcctttgtgctctctagacttctgtcatcac 125
           ||||||||||||||||  |||||||||||||
Sbjct: 65  tcctttgtgctctctatgcttctgtcatcac 95




>39799_aly-MIR157b:mirbase
          Length = 97

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 95  tcctttgtgctctctagacttctgtcatcac 125
           ||||||||||||||||  |||||||||||||
Sbjct: 67  tcctttgtgctctctaagcttctgtcatcac 97




>41077_gra-MIR157b:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 95  tcctttgtgctctctagacttctgtcatca 124
           ||||||||||||||||  ||||||||||||
Sbjct: 60  tcctttgtgctctctatgcttctgtcatca 89



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 1  gttgttgacagaagatagagagcac 25




>41296_ptc-MIR156i:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 7  gttgttgacagaagatagagagcac 31



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 95  tcctttgtgctctctagacttctgtcatcacct 127
           ||||||||||||||||  |||||| ||||||||
Sbjct: 65  tcctttgtgctctctatgcttctgccatcacct 97




>41163_aqc-MIR156b:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 95  tcctttgtgctctctagacttctgtcatc 123
           ||||||||||||||||  |||||||||||
Sbjct: 55  tcctttgtgctctctatgcttctgtcatc 83



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 13 tgacagaagatagagggcactaaggatgatatgcat 48
          ||||||||||||||| ||||  | ||||||||||||
Sbjct: 1  tgacagaagatagagagcacagatgatgatatgcat 36




>41076_gra-MIR157a:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  gttgttgacagaagatagagggcac 32
          |||||||||||||||||||| ||||
Sbjct: 1  gttgttgacagaagatagagagcac 25



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 95  tcctttgtgctctctagacttctgtcatcacc 126
           ||||||||||||| ||  ||||||||||||||
Sbjct: 70  tcctttgtgctctttatgcttctgtcatcacc 101




>40655_mtr-MIR156h:mirbase
          Length = 94

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 94  ttcctttgtgctctctagacttctgtcatcacc 126
           |||||||||||||| ||  ||||||||||||||
Sbjct: 62  ttcctttgtgctctttattcttctgtcatcacc 94




>41085_tcc-MIR156f:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  ttgttgacagaagatagagggcac 32
          ||||||||||||||||||| ||||
Sbjct: 18 ttgttgacagaagatagagagcac 41




>40653_mtr-MIR156f:mirbase
          Length = 94

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  ttgttgacagaagatagagggcac 32
          ||||||||||||||||||| ||||
Sbjct: 3  ttgttgacagaagatagagagcac 26




>40431_gma-MIR156g:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  ttgttgacagaagatagagggcac 32
          ||||||||||||||||||| ||||
Sbjct: 21 ttgttgacagaagatagagagcac 44




>40335_rco-MIR156f:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  ttgttgacagaagatagagggcac 32
          ||||||||||||||||||| ||||
Sbjct: 3  ttgttgacagaagatagagagcac 26