miRNEST 2.0, an integrative microRNA resource :: BLAST
>40646_lja-MIR396:mirbase
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 15 gtcctctttctattcttccacggctttcttgaactgcat 53
||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1 gtcctctttgtattcttccacagctttcttgaactgcat 39
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||||
Sbjct: 70 tttgcggttcaataaagctgtgggaagata 99
>40473_gma-MIR396a:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagatagagacaggatcaa 134
|||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 97 tttgcggttcaataaagctgtgggaagatacagatagggtcaa 139
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 18 ctctttctattcttccacggctttcttgaactgcat 53
|||||| ||||||||||| |||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcat 44
>40085_ath-MIR396a:mirbase
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagatagagac 126
|||||||||||||||||||||||||||||| ||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacagac 151
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>41242_csi-MIR396b:mirbase
Length = 134
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagatagagacaggatcaa 134
||||||||||||||||||||||||||||| | ||||| ||||
Sbjct: 82 ttgcggttcaataaagctgtgggaagatacaaacaggttcaa 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 16 tcctctttctattcttccacggctttcttgaactgcat 53
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 6 tcctctttgtatttttccacagctttcttgaactgcat 43
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||||
Sbjct: 66 tttgcggttcaataaagctgtgggaagata 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgcat 53
||||||||||| |||||||||||||||||
Sbjct: 1 tattcttccacagctttcttgaactgcat 29
>39877_aly-MIR396a:mirbase
Length = 172
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||||
Sbjct: 127 tttgcggttcaataaagctgtgggaagata 156
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 19 tattcttccacagctttcttgaactgca 46
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagata 113
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 ctttctattcttccacggctttcttgaactgcat 53
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagata 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagata 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagata 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 94 tgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 ctttctattcttccacggctttcttgaactgca 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 12 atggtcctctttctattcttccacggctttcttgaactgc 51
|||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 3 atggccctctttgtattcttccacagctttcttgaactgc 42
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagatagagacaggatcaaa 135
|||| |||||||||||||||||||||||| |||||| |||||
Sbjct: 108 ttgcagttcaataaagctgtgggaagatacggacagggtcaaa 150
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 91 ctttgcggttcaataaagctgtgggaa 117
|||||||||||||||||||||||||||
Sbjct: 95 ctttgcggttcaataaagctgtgggaa 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcatgg 55
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
>42807_zma-MIR396a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcatg 54
|||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcatg 54
|||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>42814_zma-MIR396h:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 100 tcttccacagctttcttgaactgcat 75
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 20 gttcaataaagctgtgggaa 1
>42813_zma-MIR396g:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcat 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 20 gttcaataaagctgtgggaa 1
>42808_zma-MIR396b:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>42461_sof-MIR396:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>42027_osa-MIR396b:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcat 56
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120
>42026_osa-MIR396a:mirbase
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgca 52
|||||||| ||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactg 50
|||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaactg 31
>41241_csi-MIR396a:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 14 ggtcctctttctattcttccacggctttcttgaactg 50
|||||||||| | |||||||| ||||||||||||||
Sbjct: 5 ggtcctctttgtgatcttccacagctttcttgaactg 41
>39381_pab-MIR396c:mirbase
Length = 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaact 49
|||| ||||||||||||||||||||
Sbjct: 20 tatttttccacggctttcttgaact 44
>42472_ssp-MIR396:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcat 53
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgc 51
|||||||| |||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaact 30
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaact 75
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 124 ttccacggctttcttgaact 105
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacggctttcttgaact 40
>39380_pab-MIR396b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 9 ttccacggctttcttgaact 28
