miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40448_gma-MIR168:mirbase
          Length = 125

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 99/113 (87%), Gaps = 5/113 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcggtctctaattcgcttggtgcaggtcgggaaccgatcttcccgcgcgtaatgga--tg 61
           |||||||||||||||||||||||||||||||||||| | ||  |||||| ||||||   |
Sbjct: 7   gcggtctctaattcgcttggtgcaggtcgggaaccggtttt--cgcgcggaatggaggag 64

                                                                
Query: 62  ccgttggcggcggcgaatttggatcccgccttgcatcaaatgaatcggaggcc 114
           | || | ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct: 65  cggtcgccggcgccgaa-ttggatcccgccttgcatcaactgaatcggaggcc 116




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 6  ggtctctaattcgcttggtgcaggtcgggaaccga 40
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccga 35



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 74  gcgaatttggatcccgccttgcatcaaatgaatcggag 111
           |||||||  |||||||||||||||||| ||||||||||
Sbjct: 90  gcgaattccgatcccgccttgcatcaactgaatcggag 127




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||||
Sbjct: 9  gcggtctctaattcgcttggtgcaggtcgggaac 42



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  ttggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||||| ||||||||||
Sbjct: 137 ttggatcccgccttgcatcaactgaatcggag 168




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||||
Sbjct: 8  gcggtctctaattcgcttggtgcaggtcgggaac 41



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  ttggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||||| ||||||||||
Sbjct: 136 ttggatcccgccttgcatcaactgaatcggag 167




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||||
Sbjct: 9  gcggtctctaattcgcttggtgcaggtcgggaac 42



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  ttggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||||| ||||||||||
Sbjct: 121 ttggatcccgccttgcatcaactgaatcggag 152




>41348_ptc-MIR168b:mirbase
          Length = 136

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  ttggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||||| ||||||||||
Sbjct: 104 ttggatcccgccttgcatcaactgaatcggag 135




>41347_ptc-MIR168a:mirbase
          Length = 160

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 80  ttggatcccgccttgcatcaaatgaatcggagg 112
           ||||||||||||||||||||| |||||||||||
Sbjct: 128 ttggatcccgccttgcatcaactgaatcggagg 160



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaac 32




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 ctaattcgcttggtgcaggtcgggaac 37
          |||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaac 27



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  ttggatcccgccttgcatcaaatgaatcg 108
           ||||||||||||||||||||| |||||||
Sbjct: 100 ttggatcccgccttgcatcaactgaatcg 128




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 80  ttggatcccgccttgcatcaaatgaatcgga 110
           ||||||||||||||||||||| |||||||||
Sbjct: 97  ttggatcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 80  ttggatcccgccttgcatcaaatgaatcgga 110
           ||||||||||||||||||||| |||||||||
Sbjct: 103 ttggatcccgccttgcatcaactgaatcgga 133



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaacc 46




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcggattcgcttggtgcaggtcgggaac 40




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||  ||||||||||||||||||||||||
Sbjct: 31 gcggtctcggattcgcttggtgcaggtcgggaac 64




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcggag 89




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcggag 104




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaac 39