miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41510_ptc-MIR530b:mirbase
          Length = 172

 Score =  311 bits (157), Expect = 1e-85
 Identities = 170/173 (98%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gccaatatgttgcctttatctgcatttgcacctgcatcttattgcgtgggttttgttttt 68
           |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||
Sbjct: 1   gccaatatgttgcctttatctgcatttgcacctgcatctt-ttgcgtttgttttgttttt 59

                                                                       
Query: 69  gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 119

                                                                
Query: 129 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172




>41509_ptc-MIR530a:mirbase
          Length = 144

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 9  gccaatatgttgcctttatctgcatttgcacctgcatctta 49
          ||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 1  gccaacatgttgcctttatctgcatttgcacctgcacctta 41



 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 142 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 181
           |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144




>41263_csi-MIR530b:mirbase
          Length = 154

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 21 cctttatctgcatttgcacctgcatcttattgcgt 55
          |||||||||||||||||||||||||||| ||||||
Sbjct: 3  cctttatctgcatttgcacctgcatcttgttgcgt 37



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 145 aggtgcaggtgcaagtgcaggtgaatgcc 173
           |||||||| ||||||||||| ||||||||
Sbjct: 126 aggtgcagttgcaagtgcagatgaatgcc 154




>41158_tcc-MIR530b:mirbase
          Length = 178

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 atgttgcctttatctgcatttgcacctgca 44
          |||| |||||||||||||||||||||||||
Sbjct: 7  atgtagcctttatctgcatttgcacctgca 36



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 144 gaggtgcaggtgcaagtgcaggtgaatgccattttgg 180
           |||||||||| |||  |||||||||||||||||||||
Sbjct: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173




>41157_tcc-MIR530a:mirbase
          Length = 163

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttatctgcatttgcacctgca 44
          ||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36




>41205_aqc-MIR530:mirbase
          Length = 142

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tctgcatttgcacctgcatct 47
          |||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30