miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41510_ptc-MIR530b:mirbase
          Length = 172

 Score =  311 bits (157), Expect = 1e-85
 Identities = 170/173 (98%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gccaatatgttgcctttatctgcatttgcacctgcatcttattgcggttgtattgttttt 67
           |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct: 1   gccaatatgttgcctttatctgcatttgcacctgcatctt-ttgcgtttgttttgttttt 59

                                                                       
Query: 68  gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 119

                                                                
Query: 128 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172




>41509_ptc-MIR530a:mirbase
          Length = 144

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 8  gccaatatgttgcctttatctgcatttgcacctgcatctta 48
          ||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 1  gccaacatgttgcctttatctgcatttgcacctgcacctta 41



 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 141 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 180
           |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144




>41263_csi-MIR530b:mirbase
          Length = 154

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 20 cctttatctgcatttgcacctgcatcttattgcg 53
          |||||||||||||||||||||||||||| |||||
Sbjct: 3  cctttatctgcatttgcacctgcatcttgttgcg 36



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 144 aggtgcaggtgcaagtgcaggtgaatgcc 172
           |||||||| ||||||||||| ||||||||
Sbjct: 126 aggtgcagttgcaagtgcagatgaatgcc 154




>41158_tcc-MIR530b:mirbase
          Length = 178

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 atgttgcctttatctgcatttgcacctgca 43
          |||| |||||||||||||||||||||||||
Sbjct: 7  atgtagcctttatctgcatttgcacctgca 36



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 143 gaggtgcaggtgcaagtgcaggtgaatgccattttgg 179
           |||||||||| |||  |||||||||||||||||||||
Sbjct: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173




>41157_tcc-MIR530a:mirbase
          Length = 163

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttatctgcatttgcacctgca 43
          ||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36




>41205_aqc-MIR530:mirbase
          Length = 142

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 26 tctgcatttgcacctgcatct 46
          |||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30