miRNEST 2.0, an integrative microRNA resource :: BLAST
>41392_ptc-MIR171l:mirbase
Length = 112
Score = 214 bits (108), Expect = 1e-56
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 16 ggagaagtagacacggcgtgatattggtccggctcatcttctgtgcataagcatctgaag 75
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
Query: 76 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112
>41499_ptc-MIR479:mirbase
Length = 85
Score = 163 bits (82), Expect = 4e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 33 gtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatgaaga 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatgaaga 63
Query: 93 cgagccgaatcaatatcactct 114
||||||||||||||||||||||
Sbjct: 64 cgagccgaatcaatatcactct 85
>41393_ptc-MIR171m:mirbase
Length = 101
Score = 89.7 bits (45), Expect = 5e-19
Identities = 92/106 (86%), Gaps = 5/106 (4%)
Strand = Plus / Plus
Query: 19 gaagtagacacggcgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 78
|||| ||||| |||||| ||||| ||||||||||||||||| || ||||| |||||||
Sbjct: 1 gaagcagacatggcgtggtattgatccggctcatcttctgt--atttgcatcagaagttc 58
Query: 79 ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 124
||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 59 ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101
>41394_ptc-MIR171n:mirbase
Length = 101
Score = 73.8 bits (37), Expect = 3e-14
Identities = 90/106 (84%), Gaps = 5/106 (4%)
Strand = Plus / Plus
Query: 19 gaagtagacacggcgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 78
|||| ||||| |||||| ||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 1 gaagcagacatggcgtggtattgatccggctcttcttctgt--atttgcatcagaagttt 58
Query: 79 ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 124
||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 59 ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101
>41258_csi-MIR479:mirbase
Length = 147
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgcttctt 126
|||||||||||||||||||||||||||||||||||||
Sbjct: 94 agacgagccgaatcaatatcactcttgtatgcttctt 130
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 15 tggagaagtagacacggcgtgatattggtccggctcatctt 55
|||||||||||||| || ||||||||||| |||||||||||
Sbjct: 3 tggagaagtagacatggtgtgatattggttcggctcatctt 43
>41232_csi-MIR171b:mirbase
Length = 165
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgcttctt 126
|||||||||||||||||||||||||||||||||||||
Sbjct: 119 agacgagccgaatcaatatcactcttgtatgcttctt 155
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 15 tggagaagtagacacggcgtgatattggtccggctcatctt 55
|||||||||||||| || ||||||||||| |||||||||||
Sbjct: 28 tggagaagtagacatggtgtgatattggttcggctcatctt 68
>41686_vvi-MIR479:mirbase
Length = 94
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 89 aagacgagccgaatcaatatcactcttgtatgcttc 124
||||||||||||| ||||||||||||||||||||||
Sbjct: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 22 gtagacacggcgtgatattggtccggctcatcttct 57
||||||| || ||| ||||||| |||||||||||||
Sbjct: 1 gtagacatggtgtggtattggttcggctcatcttct 36
>40456_gma-MIR171b:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgctt 123
|||||||||||||||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 23 tagacacggcgtgatattggtccggctcatctt 55
||||||||||||||||||||| |||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatctt 33
>40455_gma-MIR171b:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgctt 123
|||||||||||||||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 23 tagacacggcgtgatattggtccggctcatctt 55
||||||||||||||||||||| |||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatctt 33
>41064_ghr-MIR479:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 16 ggagaagtagacacggcgtgatattggtccggctcatctt 55
|||| |||||||||| |||||||||||| |||||||||||
Sbjct: 1 ggaggagtagacacgacgtgatattggttcggctcatctt 40
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 93 cgagccgaatcaatatcactcttgtatgctt 123
||||||||||||||||||||| |||||||||
Sbjct: 63 cgagccgaatcaatatcactcatgtatgctt 93
