miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41055_ghr-MIR394a:mirbase
          Length = 167

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                     
Query: 4  tttcatggaggtttggcaaagggtttcctacagagcttattggcattctgtccacctcc 62
          |||||||| ||||| |||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 4  tttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62



 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaa 152
           |||||||||||||||||||| | | ||||| || ||||||||||||||
Sbjct: 107 gaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 154




>41424_ptc-MIR394b:mirbase
          Length = 147

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                      
Query: 19 gcaaagggtttcctacagagcttattggcattctgtccacctcc 62
          |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 14 gcaaagggtttcttacagagtttattggcattctgtccacctcc 57



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
           |||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91  gaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaac 139




>41423_ptc-MIR394b:mirbase
          Length = 147

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                      
Query: 19 gcaaagggtttcctacagagcttattggcattctgtccacctcc 62
          |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 14 gcaaagggtttcttacagagtttattggcattctgtccacctcc 57



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
           |||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91  gaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaac 139




>41422_ptc-MIR394a:mirbase
          Length = 147

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                             
Query: 13 ggtttggcaaagggtttcctacagagcttattggcattctgtccacctcca 63
          ||||| |||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 8  ggttttgcaaagggtttcttacagagttttttggcattctgtccacctcca 58



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
           |||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91  gaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 139




>41421_ptc-MIR394a:mirbase
          Length = 147

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                             
Query: 13 ggtttggcaaagggtttcctacagagcttattggcattctgtccacctcca 63
          ||||| |||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 8  ggttttgcaaagggtttcttacagagttttttggcattctgtccacctcca 58



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
           |||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91  gaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 139




>40472_gma-MIR394b:mirbase
          Length = 104

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acagagcttattggcattctgtccacctccact 65
          |||||| ||||||||||||||||||||||||||
Sbjct: 3  acagagtttattggcattctgtccacctccact 35




>40471_gma-MIR394a:mirbase
          Length = 157

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acagagcttattggcattctgtccacctccact 65
          |||||| ||||||||||||||||||||||||||
Sbjct: 29 acagagtttattggcattctgtccacctccact 61




>41134_tcc-MIR394a:mirbase
          Length = 120

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 23 agggtttcctacagagcttattggcattctgtccacctcc 62
          |||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 1  agggcttcttacagagtttattggcattctgtccacctcc 40



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctt 145
           |||||||||||||||||||| | | ||||| || |||||||
Sbjct: 80  gaggtgggcatactgccaactgggctctgttggcttctctt 120




>41239_csi-MIR394:mirbase
          Length = 147

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 32 tacagagcttattggcattctgtccacctcc 62
          ||||||| |||||||||||||||||||||||
Sbjct: 6  tacagagtttattggcattctgtccacctcc 36



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctt 145
           |||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 107 gaggtgggcatactgccaactgagctctgttggcttctctt 147




>41644_vvi-MIR394b:mirbase
          Length = 93

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 33 acagagcttattggcattctgtccacctcc 62
          |||||| |||||||||||||||||||||||
Sbjct: 1  acagagtttattggcattctgtccacctcc 30



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 gaggtgggcatactgccaac 124
           ||||||||||||||||||||
Sbjct: 63  gaggtgggcatactgccaac 82




>40078_ath-MIR394b:mirbase
          Length = 121

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 105 gaggtgggcatactgccaacagagatctgt 134
           ||||||||||||||||||| ||||||||||
Sbjct: 89  gaggtgggcatactgccaatagagatctgt 118



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33




>39867_aly-MIR394a:mirbase
          Length = 220

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                      
Query: 3  ttttcatggaggtttggcaaagggtttcctacagagcttattggcattctgtccacctcc 62
          ||||||||  |||||| ||||| ||||| ||||||  |  ||||||||||||||||||||
Sbjct: 28 ttttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87




>39868_aly-MIR394b:mirbase
          Length = 160

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 105 gaggtgggcatactgccaacagagatctgt 134
           ||||||| |||| |||||||||||||||||
Sbjct: 101 gaggtggacatattgccaacagagatctgt 130



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 41 ttggcattctgtccacctcc 60




>41776_bdi-MIR394:mirbase
          Length = 200

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
           |||||||||||||||||||  ||| | ||| || ||| |||||||||||
Sbjct: 127 gaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaac 175



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72




>41645_vvi-MIR394c:mirbase
          Length = 102

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctcca 63
          |||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31




>41643_vvi-MIR394a:mirbase
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctcca 63
          |||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31




>41135_tcc-MIR394b:mirbase
          Length = 125

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctcca 63
          |||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcca 41




>41056_ghr-MIR394b:mirbase
          Length = 165

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctcca 63
          |||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcca 55




>42790_zma-MIR394b:mirbase
          Length = 122

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>42789_zma-MIR394a:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>42569_sbi-MIR394b:mirbase
          Length = 77

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 2  ttggcattctgtccacctcc 21




>42568_sbi-MIR394a:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>42000_osa-MIR394:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33




>40402_ahy-MIR394:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41




>40077_ath-MIR394a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33