miRNEST 2.0, an integrative microRNA resource :: BLAST
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 77.8 bits (39), Expect = 2e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 4 tttcatggaggtttggcaaagggtttcctacagagcttattggcattctgtccacctcc 62
|||||||| ||||| |||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 4 tttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
Score = 56.0 bits (28), Expect = 9e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaa 152
|||||||||||||||||||| | | ||||| || ||||||||||||||
Sbjct: 107 gaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 154
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 19 gcaaagggtttcctacagagcttattggcattctgtccacctcc 62
|||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 14 gcaaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 65.9 bits (33), Expect = 9e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
|||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91 gaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaac 139
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 19 gcaaagggtttcctacagagcttattggcattctgtccacctcc 62
|||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 14 gcaaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 65.9 bits (33), Expect = 9e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
|||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91 gaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaac 139
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 6e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 13 ggtttggcaaagggtttcctacagagcttattggcattctgtccacctcca 63
||||| |||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 8 ggttttgcaaagggtttcttacagagttttttggcattctgtccacctcca 58
Score = 65.9 bits (33), Expect = 9e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
|||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91 gaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 139
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 6e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 13 ggtttggcaaagggtttcctacagagcttattggcattctgtccacctcca 63
||||| |||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 8 ggttttgcaaagggtttcttacagagttttttggcattctgtccacctcca 58
Score = 65.9 bits (33), Expect = 9e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
|||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct: 91 gaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 139
>40472_gma-MIR394b:mirbase
Length = 104
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 33 acagagcttattggcattctgtccacctccact 65
|||||| ||||||||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctccact 35
>40471_gma-MIR394a:mirbase
Length = 157
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 33 acagagcttattggcattctgtccacctccact 65
|||||| ||||||||||||||||||||||||||
Sbjct: 29 acagagtttattggcattctgtccacctccact 61
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 23 agggtttcctacagagcttattggcattctgtccacctcc 62
|||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 1 agggcttcttacagagtttattggcattctgtccacctcc 40
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctt 145
|||||||||||||||||||| | | ||||| || |||||||
Sbjct: 80 gaggtgggcatactgccaactgggctctgttggcttctctt 120
>41239_csi-MIR394:mirbase
Length = 147
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctcc 62
||||||| |||||||||||||||||||||||
Sbjct: 6 tacagagtttattggcattctgtccacctcc 36
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctt 145
|||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 107 gaggtgggcatactgccaactgagctctgttggcttctctt 147
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 33 acagagcttattggcattctgtccacctcc 62
|||||| |||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcc 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaac 124
||||||||||||||||||||
Sbjct: 63 gaggtgggcatactgccaac 82
>40078_ath-MIR394b:mirbase
Length = 121
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||||||||||||||| ||||||||||
Sbjct: 89 gaggtgggcatactgccaatagagatctgt 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>39867_aly-MIR394a:mirbase
Length = 220
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 3 ttttcatggaggtttggcaaagggtttcctacagagcttattggcattctgtccacctcc 62
|||||||| |||||| ||||| ||||| |||||| | ||||||||||||||||||||
Sbjct: 28 ttttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87
>39868_aly-MIR394b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||| |||| |||||||||||||||||
Sbjct: 101 gaggtggacatattgccaacagagatctgt 130
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 41 ttggcattctgtccacctcc 60
>41776_bdi-MIR394:mirbase
Length = 200
Score = 42.1 bits (21), Expect = 1e-04
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgtgggtttctctttgtaaaac 153
||||||||||||||||||| ||| | ||| || ||| |||||||||||
Sbjct: 127 gaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaac 175
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcca 63
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcca 63
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcca 63
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcca 41
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcca 63
|||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcca 55
>42790_zma-MIR394b:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42789_zma-MIR394a:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42000_osa-MIR394:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33