miRNEST 2.0, an integrative microRNA resource :: BLAST
>51762_ptc-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 3e-08
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 34 gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
|||||||| |||||||||||| ||||| ||| |||||| ||| |||||| | || ||
Sbjct: 18 gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 74
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 75 catgcactgcctcttccctggc 96
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 50.1 bits (25), Expect = 5e-07
Identities = 68/80 (85%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 34 gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
|||||||| |||||||||||| ||||| ||| |||||| ||| |||||| | || ||
Sbjct: 3 gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 59
Query: 94 catgcactgcctcttccctg 113
||||||||||||||||||||
Sbjct: 60 catgcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||||||||||||||||||||||||
Sbjct: 66 tcccatgcactgcctcttccctggc 90
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 79 tgttttgacccttcccatgcactgcctcttccctggc 115
||||||| | || ||||||||||||||||||||||||
Sbjct: 42 tgttttgtctctacccatgcactgcctcttccctggc 6
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 tgttttgacccttcccatgcactgcctcttccctggc 115
||||||| | || ||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggc 140
>54892_vvi-miR408:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 cccatgcactgcctcttccctggc 115
||||||||||||||||||||||||
Sbjct: 74 cccatgcactgcctcttccctggc 97
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 93 ccatgcactgcctcttccctggc 115
|||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggc 2
>51397_ppt-miR408b:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggc 113
>51347_ppe-miR408:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggc 95
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ccatgcactgcctcttccctgg 114
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 148 tcccctgcactgcctcttccctggc 172
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 240 tcccctgcactgcctcttccctggc 264
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95 atgcactgcctcttccctggc 115
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 180 tcccctgcactgcctcttccctggc 204
>54389_rco-miR408:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 79 tgttttgacccttcccatgcactgcctcttccctggc 115
||||||| | || ||| ||||||||||||||||||||
Sbjct: 74 tgttttggctctacccctgcactgcctcttccctggc 110
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95 atgcactgcctcttccctggc 115
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 tcccatgcactgcctcttccctggc 115
|||| ||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggc 173
>54690_tae-miR408:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 tgcactgcctcttccctggc 115
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>54649_sof-miR408d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 tgcactgcctcttccctggc 115
||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196
