miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54784_vvi-miR162:pmrd
          Length = 103

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 13 tgaagtcactggaggcagcggttcatcgatctcttcctgaaatt 56
          ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1  tgaagtcactggatgcagcggttcatcgatctcttcctgaaatt 44




>48545_gma-miR162a:pmrd
          Length = 102

 Score = 75.8 bits (38), Expect = 7e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 12 gtgaagtcactggaggcagcggttcatcgatctcttcctgaa 53
          |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1  gtgaagtcactggatgcagcggttcatcgatctcttcctgaa 42



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  cgataaacctctgcatccagcgctc 115
           |||||||||||||||||||||||||
Sbjct: 74  cgataaacctctgcatccagcgctc 98




>48423_cpa-miR162a:pmrd
          Length = 109

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 15 aagtcactggaggcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||||||||||||||
Sbjct: 7  aagtcactggaggcagcggttcatcgatctcttcctg 43




>48493_ghr-miR162a:pmrd
          Length = 148

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 86/98 (87%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                       
Query: 19  cactggaggcagcggttcatcgatctcttcctga-aatttggctgtg-gaatcctacaca 76
           |||||||||||||||||||||||||||||||||| ||||| | |||| ||||   |||||
Sbjct: 22  cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaat--aacaca 79

                                                 
Query: 77  aa-gcaagaatcgggcgataaacctctgcatccagcgc 113
           ||  || ||||||  |||||||||||||||||||||||
Sbjct: 80  aatacatgaatcgatcgataaacctctgcatccagcgc 117




>52400_ptc-miRf10578-akr:pmrd
          Length = 103

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctg 51
           |||| |||||||||||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 91  cgataaacctctgcatccagcgct 114
           ||||||||||||||||||||||||
Sbjct: 27  cgataaacctctgcatccagcgct 4




>52399_ptc-miRf10577-akr:pmrd
          Length = 103

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctg 51
           |||| |||||||||||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 91  cgataaacctctgcatccagcgct 114
           ||||||||||||||||||||||||
Sbjct: 27  cgataaacctctgcatccagcgct 4




>51616_ptc-miR162a:pmrd
          Length = 107

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctg 51
          |||| |||||||||||||||||||||||||||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatctcttcctg 41



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  cgataaacctctgcatccagcgct 114
           ||||||||||||||||||||||||
Sbjct: 79  cgataaacctctgcatccagcgct 102




>54387_rco-miR162:pmrd
          Length = 96

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33




>52498_ptc-miRf10676-akr:pmrd
          Length = 101

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
           |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 26  cgataaacctctgcatccag 7




>52497_ptc-miRf10675-akr:pmrd
          Length = 105

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
           |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 28  cgataaacctctgcatccag 9




>52244_ptc-miRf10422-akr:pmrd
          Length = 105

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
           |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 28  cgataaacctctgcatccag 9




>52243_ptc-miRf10421-akr:pmrd
          Length = 101

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 14  gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
           |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 26  cgataaacctctgcatccag 7




>51618_ptc-miR162c:pmrd
          Length = 107

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
          |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 79  cgataaacctctgcatccag 98




>51617_ptc-miR162b:pmrd
          Length = 107

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
          |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 79  cgataaacctctgcatccag 98




>46937_ath-miR162a:pmrd
          Length = 140

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 16 agtcactggaggcagcggttcatcgatctcttcctg 51
          |||| |||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  cgataaacctctgcatccagcg 112
           ||||||||||||||||||||||
Sbjct: 90  cgataaacctctgcatccagcg 111




>47354_ath-miRf10254-akr:pmrd
          Length = 115

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 76  aaagcaagaatcgggcgataaacctctgcatccagcgct 114
           |||||||||||||  ||||||||||||||||||||||||
Sbjct: 49  aaagcaagaatcgatcgataaacctctgcatccagcgct 11



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 12  gtgaagtcactggaggcagcggttcatcgatc 43
           |||||||| |||||||||||||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80




>46938_ath-miR162b:pmrd
          Length = 111

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 76  aaagcaagaatcgggcgataaacctctgcatccagcgct 114
           |||||||||||||  ||||||||||||||||||||||||
Sbjct: 65  aaagcaagaatcgatcgataaacctctgcatccagcgct 103



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 gtgaagtcactggaggcagcggttcatcgatc 43
          |||||||| |||||||||||||||||||||||
Sbjct: 3  gtgaagtcgctggaggcagcggttcatcgatc 34




>48546_gma-miR162m:pmrd
          Length = 367

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 36/37 (97%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                
Query: 91  cgataaacctctgcatccagcgctccactttgcctct 127
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 2   cgataaacctctgcatccagcgct-cactttgcctct 37




>48707_mtr-miR162d:pmrd
          Length = 87

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 21 ctggaggcagcggttcatcgatctcttcctgaaatttg 58
          ||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1  ctggatgcagcggttcatcgatctgttcctgaattttg 38



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 83  gaatcgggcgataaacctctgcatccag 110
           ||||||| ||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatccag 87




>48706_mtr-miR162c:pmrd
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                
Query: 21 ctggaggcagcggttcatcgatctcttcctgaaatttg 58
          ||||| |||||||||||||||||| |||||||| ||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattttg 49



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 83  gaatcgggcgataaacctctgcatcca 109
           ||||||| |||||||||||||||||||
Sbjct: 27  gaatcggtcgataaacctctgcatcca 1




>48705_mtr-miR162b:pmrd
          Length = 85

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 22 tggaggcagcggttcatcgatctcttcctgaaatttg 58
          |||| |||||||||||||||||| |||||||| ||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcctgaattttg 37



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgggcgataaacctctgcatcca 109
           ||||||| |||||||||||||||||||
Sbjct: 59  gaatcggtcgataaacctctgcatcca 85




>48685_lsa-miR162:pmrd
          Length = 89

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  cgataaacctctgcatccagcgctc 115
           |||||||||||||||||||||||||
Sbjct: 2   cgataaacctctgcatccagcgctc 26




>48682_llu-miR162:pmrd
          Length = 80

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 21 ctggaggcagcggttcatcgatctcttcctgaa 53
          ||||| ||||||||| |||||||||||||||||
Sbjct: 1  ctggaagcagcggtttatcgatctcttcctgaa 33



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 72  acacaaagcaagaatcgggcgataaacctctgcatccag 110
           ||||||| || ||||||  ||||||||||||||||||||
Sbjct: 42  acacaaaccatgaatcgatcgataaacctctgcatccag 80




>54948_zma-miR162b:pmrd
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 83  gaatcgggcgataaacctctgcatccag 110
           ||||||| ||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>54542_sly-miR162:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 83  gaatcgggcgataaacctctgcatccag 110
           ||||||| ||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99




>48834_osa-miR162a:pmrd
          Length = 171

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  cgataaacctctgcatccag 110
           ||||||||||||||||||||
Sbjct: 144 cgataaacctctgcatccag 163




>48690_mdo-miR162:pmrd
          Length = 88

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 21 ctggaggcagcggttcatcgatct 44
          ||||||||| ||||||||||||||
Sbjct: 1  ctggaggcatcggttcatcgatct 24