miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48680_lja-miR396:pmrd
          Length = 108

 Score = 69.9 bits (35), Expect = 9e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 17 gtcctctttgtattcttcctcagctttcttgaactgcat 55
          ||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gtcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 190 ttgcggttcaataaagctgtgggaagata 218
           |||||||||||||||||||||||||||||
Sbjct: 71  ttgcggttcaataaagctgtgggaagata 99




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 189 gttgcggttcaataaagctgtgggaagatacaa 221
           |||||||||||||||||||||||||||||||||
Sbjct: 91  gttgcggttcaataaagctgtgggaagatacaa 123



 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 26 gtattcttcctcagctttcttgaactgca 54
          |||||||||| ||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 20 ctctttgtattcttcctcagctttcttgaactgcatc 56
          |||||||||||||||| ||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatc 45



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 190 ttgcggttcaataaagctgtgggaagatacaaatagg 226
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 98  ttgcggttcaataaagctgtgggaagatacagatagg 134




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 189 gttgcggttcaataaagctgtgggaagatac 219
           |||||||||||||||||||||||||||||||
Sbjct: 84  gttgcggttcaataaagctgtgggaagatac 114



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 22 ctttgtattcttcctcagctttcttgaactgcat 55
          |||||||||||||| |||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 191 tgcggttcaataaagctgtgggaagatacaa 221
           |||||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagatacaa 130



 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 24 ttgtattcttcctcagctttcttgaactgca 54
          |||||||||||| ||||||||||||||||||
Sbjct: 1  ttgtattcttccacagctttcttgaactgca 31




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 191 tgcggttcaataaagctgtgggaagatacaa 221
           |||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaa 132



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 22 ctttgtattcttcctcagctttcttgaactgca 54
          |||||||||||||| ||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 190 ttgcggttcaataaagctgtgggaagataca 220
           |||||||||||||||||||||||||||||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagataca 155



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 cctctttgtattcttcctcagctttcttgaactgca 54
          ||||| ||||||||||| ||||||||||||||||||
Sbjct: 5  cctctctgtattcttccacagctttcttgaactgca 40




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 190 ttgcggttcaataaagctgtgggaagataca 220
           |||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 25 tgtattcttcctcagctttcttgaactgca 54
          ||||||||||| ||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118




>54645_sof-miR396:pmrd
          Length = 134

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 30 tcttcctcagctttcttgaactgcatctt 58
          |||||| ||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatctt 37



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 189 gttgcggttcaataaagctgtggga 213
           |||||||||||||||||||||||||
Sbjct: 91  gttgcggttcaataaagctgtggga 115




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 189 gttgcggttcaataaagctgtggga 213
           |||||||||||||||||||||||||
Sbjct: 91  gttgcggttcaataaagctgtggga 115




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 190 ttgcggttcaataaagctgtgggaa 214
           |||||||||||||||||||||||||
Sbjct: 97  ttgcggttcaataaagctgtgggaa 121



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 32 ttcctcagctttcttgaactgcat 55
          |||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>48486_gcl-miR396b:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 190 ttgcggttcaataaagctgtggga 213
           ||||||||||||||||||||||||
Sbjct: 78  ttgcggttcaataaagctgtggga 101




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 ttgcggttcaataaagctgtggga 213
           ||||||||||||||||||||||||
Sbjct: 24  ttgcggttcaataaagctgtggga 1



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 32  ttcctcagctttcttgaactgcatc 56
           |||| ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 30 tcttcctcagctttcttgaactgcatc 56
          |||||| ||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcatc 28



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 95  gttcaataaagctgtgggaa 114




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 32 ttcctcagctttcttgaactgcatct 57
          |||| |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tcttcctcagctttcttgaactgcat 55
          |||||| |||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcat 27



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 83  gttcaataaagctgtgggaa 102




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tcttcctcagctttcttgaactgcat 55
          |||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tcttcctcagctttcttgaactgcat 55
          |||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 30 tcttcctcagctttcttgaactgca 54
          |||||| ||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gttcaataaagctgtgggaa 214
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 32 ttcctcagctttcttgaactgcat 55
          |||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 32 ttcctcagctttcttgaactgcat 55
          |||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24