miRNEST 2.0, an integrative microRNA resource :: BLAST
>54869_vvi-miR396b:pmrd
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ctgccatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||||
Sbjct: 3 ctgccatgcttttccacagctttcttgaactt 34
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 aagttcaagaaagctgtgggaaa 111
|||||||||||||||||||||||
Sbjct: 77 aagttcaagaaagctgtgggaaa 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3 gccatgcttttccacagctttcttgaactt 32
|||||| ||| |||||||||||||||||||
Sbjct: 106 gccatggtttcccacagctttcttgaactt 77
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>51738_ptc-miR396e:pmrd
Length = 145
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>51737_ptc-miR396d:pmrd
Length = 154
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>48579_gma-miR396b:pmrd
Length = 126
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaactt 41
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tcaagaaagctgtgggaaaatatggc 118
||||||||||||||||| ||||||||
Sbjct: 91 tcaagaaagctgtgggagaatatggc 116
>54868_vvi-miR396a:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaact 31
|||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 tgccatgcttttccacagctttcttgaactt 32
|||||||| ||||||||||||||||||||||
Sbjct: 11 tgccatgcctttccacagctttcttgaactt 41
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 atgcttttccacagctttcttgaactt 32
|||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaactt 122
>51736_ptc-miR396c:pmrd
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 tgccatgcttttccacagctttcttgaactt 32
||||||| |||||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aagttcaagaaagctgtgggaaaatatggc 118
||||||||||||||||||| |||| |||||
Sbjct: 31 aagttcaagaaagctgtggaaaaacatggc 2
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
|||||| |||||| ||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaactt 74
>48947_osa-miR396c:pmrd
Length = 141
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 tgccatgcttttccacagctttcttgaactt 32
|||||||| ||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaactt 31
>48580_gma-miR396c:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 atgcttttccacagctttcttgaactt 32
|||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 gccatgcttttccacagctttcttgaactt 32
|||||| |||||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaactt 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 89 aagttcaagaaagctgtgggaaaatatggc 118
||||||||||||||||||| |||| |||||
Sbjct: 73 aagttcaagaaagctgtggaaaaacatggc 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
|||||| |||||| ||||||||||||||
Sbjct: 3 catgctattccacggctttcttgaactt 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaactt 26
>47009_ath-miR396b:pmrd
Length = 135
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 cttttccacagctttcttgaactttc 34
||||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactttc 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 87 gaaagttcaagaaagctgtgggaaaatatg 116
||||||||||||||||||||| ||| ||||
Sbjct: 33 gaaagttcaagaaagctgtggaaaagtatg 4
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 tcaagaaagctgtgggaaaa 112
||||||||||||||||||||
Sbjct: 109 tcaagaaagctgtgggaaaa 128
>51564_pta-miR396:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 cttttccacagctttcttgaacttt 33
|||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaacttt 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 4 ccatgcttttccacagctttcttgaacttt 33
||||||||| |||||| |||||||||||||
Sbjct: 111 ccatgctttcccacagttttcttgaacttt 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 88 aaagttcaagaaagctgtgggaaaatatg 116
|||||||||||||||||||| ||| ||||
Sbjct: 38 aaagttcaagaaagctgtggaaaagtatg 10
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 aaagttcaagaaagctgtgggaaa 111
||||||||||||| ||||||||||
Sbjct: 82 aaagttcaagaaaactgtgggaaa 105
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 88 aaagttcaagaaagctgtgggaaaatatg 116
|||| |||||||||| |||||||||||||
Sbjct: 136 aaagctcaagaaagccgtgggaaaatatg 164
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 88 aaagttcaagaaagctgtgggaaaatatg 116
|||| |||||||||| |||||||||||||
Sbjct: 139 aaagctcaagaaagccgtgggaaaatatg 167
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 aagttcaagaaagctgtgggaaa 111
|||||||||||||||||||||||
Sbjct: 135 aagttcaagaaagctgtgggaaa 157
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaac 30
||||||||||||| ||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaac 29
>48374_bna-miR396a:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaactttc 34
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactttc 23
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 gaaagttcaagaaagctgtgg 107
|||||||||||||||||||||
Sbjct: 23 gaaagttcaagaaagctgtgg 3
>55078_zma-miR396g:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tttccacagctttcttgaactt 32
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tttccacagctttcttgaactt 32
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>46888_aqc-miR396b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaacttt 33
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttt 22
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 aaagttcaagaaagctgtgg 107
||||||||||||||||||||
Sbjct: 22 aaagttcaagaaagctgtgg 3
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 aaagttcaagaaagctgtgggaaa 111
||||||||||| ||||||||||||
Sbjct: 66 aaagttcaagatagctgtgggaaa 89
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20