miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  ctgccatgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 3  ctgccatgcttttccacagctttcttgaactt 34



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 89  aagttcaagaaagctgtgggaaa 111
           |||||||||||||||||||||||
Sbjct: 77  aagttcaagaaagctgtgggaaa 99



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 3   gccatgcttttccacagctttcttgaactt 32
           |||||| ||| |||||||||||||||||||
Sbjct: 106 gccatggtttcccacagctttcttgaactt 77




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 5   catgcttttccacagctttcttgaactt 32
           ||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 5   catgcttttccacagctttcttgaactt 32
           ||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaactt 41



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||| ||||||||
Sbjct: 91  tcaagaaagctgtgggagaatatggc 116




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 5  catgcttttccacagctttcttgaact 31
          |||||||||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaact 33




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          |||||||| ||||||||||||||||||||||
Sbjct: 11 tgccatgcctttccacagctttcttgaactt 41




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 6   atgcttttccacagctttcttgaactt 32
           |||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaactt 122




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          ||||||| |||||||||||||||||||||||
Sbjct: 1  tgccatgtttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 89  aagttcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||||| |||| |||||
Sbjct: 31  aagttcaagaaagctgtggaaaaacatggc 2



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 5   catgcttttccacagctttcttgaactt 32
           |||||| |||||| ||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaactt 74




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          |||||||| ||||||||||||||||||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaactt 31




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 6  atgcttttccacagctttcttgaactt 32
          |||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 3   gccatgcttttccacagctttcttgaactt 32
           |||||| |||||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaactt 73



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 89  aagttcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||||| |||| |||||
Sbjct: 73  aagttcaagaaagctgtggaaaaacatggc 102



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          |||||| |||||| ||||||||||||||
Sbjct: 3  catgctattccacggctttcttgaactt 30




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 7  tgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaactt 26




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  cttttccacagctttcttgaactttc 34
          ||||||||||||||||||||||||||
Sbjct: 8  cttttccacagctttcttgaactttc 33



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 87  gaaagttcaagaaagctgtgggaaaatatg 116
           ||||||||||||||||||||| ||| ||||
Sbjct: 33  gaaagttcaagaaagctgtggaaaagtatg 4



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tcaagaaagctgtgggaaaa 112
           ||||||||||||||||||||
Sbjct: 109 tcaagaaagctgtgggaaaa 128




>51564_pta-miR396:pmrd
          Length = 119

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  cttttccacagctttcttgaacttt 33
          |||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaacttt 38



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 4   ccatgcttttccacagctttcttgaacttt 33
           ||||||||| |||||| |||||||||||||
Sbjct: 111 ccatgctttcccacagttttcttgaacttt 82



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 88  aaagttcaagaaagctgtgggaaaatatg 116
           |||||||||||||||||||| ||| ||||
Sbjct: 38  aaagttcaagaaagctgtggaaaagtatg 10



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  aaagttcaagaaagctgtgggaaa 111
           ||||||||||||| ||||||||||
Sbjct: 82  aaagttcaagaaaactgtgggaaa 105




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 88  aaagttcaagaaagctgtgggaaaatatg 116
           |||| |||||||||| |||||||||||||
Sbjct: 136 aaagctcaagaaagccgtgggaaaatatg 164




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 88  aaagttcaagaaagctgtgggaaaatatg 116
           |||| |||||||||| |||||||||||||
Sbjct: 139 aaagctcaagaaagccgtgggaaaatatg 167




>54584_smo-miR396:pmrd
          Length = 168

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 89  aagttcaagaaagctgtgggaaa 111
           |||||||||||||||||||||||
Sbjct: 135 aagttcaagaaagctgtgggaaa 157



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 5  catgcttttccacagctttcttgaac 30
          ||||||||||||| ||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaac 29




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttccacagctttcttgaactttc 34
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactttc 23



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  gaaagttcaagaaagctgtgg 107
           |||||||||||||||||||||
Sbjct: 23  gaaagttcaagaaagctgtgg 3




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tttccacagctttcttgaactt 32
          ||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaactt 23




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tttccacagctttcttgaactt 32
          ||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaactt 23




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ttccacagctttcttgaacttt 33
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 88  aaagttcaagaaagctgtgg 107
           ||||||||||||||||||||
Sbjct: 22  aaagttcaagaaagctgtgg 3



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  aaagttcaagaaagctgtgggaaa 111
           ||||||||||| ||||||||||||
Sbjct: 66  aaagttcaagatagctgtgggaaa 89




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ttccacagctttcttgaact 31
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20