miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>49892_osa-miRf10677-akr:pmrd
          Length = 153

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  gctgcatttgcacctgcaccta 26
          ||||||||||||||||||||||
Sbjct: 7  gctgcatttgcacctgcaccta 28

>54727_tae-miR2011:pmrd
          Length = 160

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  gctgcatttgcacctgcacc 24
          ||||||||||||||||||||
Sbjct: 14 gctgcatttgcacctgcacc 33

>52848_ptc-miRf11026-akr:pmrd
          Length = 124

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  ctgcatttgcacctgcacct 25
          ||||||||||||||||||||
Sbjct: 9  ctgcatttgcacctgcacct 28

>52847_ptc-miRf11025-akr:pmrd
          Length = 138

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  ctgcatttgcacctgcacct 25
          ||||||||||||||||||||
Sbjct: 17 ctgcatttgcacctgcacct 36

>51904_ptc-miRf10082-akr:pmrd
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  ctgcatttgcacctgcacct 25
          ||||||||||||||||||||
Sbjct: 6  ctgcatttgcacctgcacct 25

>51806_ptc-miR530a:pmrd
          Length = 144

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  ctgcatttgcacctgcacct 25
          ||||||||||||||||||||
Sbjct: 20 ctgcatttgcacctgcacct 39