miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54494_sbi-miR399f:pmrd
Length = 120
Score = 101 bits (51), Expect = 9e-23
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 6 gattactgggccatttctccttgggcagagtgatcaaacctcacattgctggatctgttt 65
|||||| |||||||||||||||||||||||| || || | || |||||||||| | ||
Sbjct: 16 gattaccgggccatttctccttgggcagagtaattgaattttactttgctggatccggtt 75
Query: 66 tgctctgccaaaggagatttgcccagcgatccaca 100
||||||||||||||||||||||||||| |||||||
Sbjct: 76 tgctctgccaaaggagatttgcccagcaatccaca 110
>48969_osa-miR399f:pmrd
Length = 117
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgcccagcgatccaca 100
||||||||||||||||||||||||| |||||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaatccaca 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gattactgggccatttctccttgggcagag 35
|||||| ||||||| |||||||||||||||
Sbjct: 6 gattaccgggccatgtctccttgggcagag 35
>48970_osa-miR399g:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcccagcgat 113
>48754_mtr-miR399e:pmrd
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccagcgat 119
>48750_mtr-miR399a:pmrd
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccagcgat 119
>54493_sbi-miR399e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagc 108
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgcccagc 106
>48968_osa-miR399e:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>54881_vvi-miR399e:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 79 ctctgccaaaggagatttgccc 100
>48377_bna-miR399:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 63 ctctgccaaaggagatttgccc 84
>47020_ath-miR399f:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 85 ctctgccaaaggagatttgccc 106
>47019_ath-miR399e:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ttttgctctgccaaaggagatttgcc 88
|||| |||||||||||||||||||||
Sbjct: 71 ttttcctctgccaaaggagatttgcc 96
>47018_ath-miR399d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 67 ctctgccaaaggagatttgccc 88
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgccc 89
|||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgccc 111
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgccc 89
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54877_vvi-miR399a:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tgctctgccaaaggagatttgccc 89
||||||||||||||||| ||||||
Sbjct: 62 tgctctgccaaaggagaattgccc 85
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgccc 89
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
