miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51723_ptc-miR393d:pmrd
Length = 107
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 22 gttggagtgttccaaagggatcgcattgatctaatgactttcgatgtctatatgatgtta 81
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gttggagtgttccaaagggatcgcattgatctaatgacttttgatgtctatatgatgtta 60
Query: 82 atgtttagtcatttcattggatcatgcgatcccttaggaattttcca 128
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtttagtcatttcattggatcatgcgatcccttaggaattttcca 107
>51722_ptc-miR393c:pmrd
Length = 107
Score = 153 bits (77), Expect = 4e-38
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 24 tggagtgttccaaagggatcgcattgatctaatgactttcgatgtctatatgatgttaat 83
||||||||||||||||||||||||||||||||||||| |||||||||| || || |||||
Sbjct: 3 tggagtgttccaaagggatcgcattgatctaatgactctcgatgtctaaatcatattaat 62
Query: 84 gtttagtcatttcattggatcatgcgatcccttaggaattttcca 128
||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 63 gtttagttttttcgttggatcatgcgatcccttaggaattttcca 107
>48501_ghr-miR393:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatctaatg 57
||||||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatctaatg 26
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 cattggatcatgcgatccctt 116
|||||||||||||||||||||
Sbjct: 95 cattggatcatgcgatccctt 115
>55063_zma-miR393g:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcta 23
>55061_zma-miR393e:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatcta 65
>55060_zma-miR393d:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatcta 67
>55059_zma-miR393c:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatcta 25
>55058_zma-miR393b:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatcta 25
>55056_zma-miR393:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatcta 54
|||||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatcta 43
>54849_vvi-miR393a:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttccaaagggatcgcattgatc 52
|||||||||||||||||||||||
Sbjct: 9 gttccaaagggatcgcattgatc 31
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 cattggatcatgcgatcccttaggaa 121
||||||||||||| ||||||||||||
Sbjct: 90 cattggatcatgctatcccttaggaa 115
>48919_osa-miR393b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatct 53
||||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatct 48
>48918_osa-miR393b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatct 53
||||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatct 48
>55062_zma-miR393f:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55057_zma-miR393a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>54850_vvi-miR393b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>54470_sbi-miR393:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 17 tccaaagggatcgcattgatc 37
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 82 tccaaagggatcgcattgatc 62
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 17 tccaaagggatcgcattgatc 37
>51721_ptc-miR393b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51720_ptc-miR393a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48917_osa-miR393:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48731_mtr-miR393b:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
>48730_mtr-miR393:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>48576_gma-miR393:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48373_bna-miR393:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 12 tccaaagggatcgcattgatc 32
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 10 tccaaagggatcgcattgatc 30
>46999_ath-miR393b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>46998_ath-miR393a:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tccaaagggatcgcattgatc 52
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
