miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51872_ptc-miRf10050-akr:pmrd
          Length = 138

 Score =  274 bits (138), Expect = 2e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 60

                                                                       
Query: 64  tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 120

                             
Query: 124 tgattaagatggtataat 141
           ||||||||||||||||||
Sbjct: 121 tgattaagatggtataat 138




>51871_ptc-miRf10049-akr:pmrd
          Length = 138

 Score =  274 bits (138), Expect = 2e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 60

                                                                       
Query: 64  tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 120

                             
Query: 124 tgattaagatggtataat 141
           ||||||||||||||||||
Sbjct: 121 tgattaagatggtataat 138




>52769_ptc-miRf10947-akr:pmrd
          Length = 124

 Score =  246 bits (124), Expect = 4e-66
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60

                                                                       
Query: 71  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120

               
Query: 131 gatg 134
           ||||
Sbjct: 121 gatg 124




>51870_ptc-miRf10048-akr:pmrd
          Length = 124

 Score =  246 bits (124), Expect = 4e-66
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60

                                                                       
Query: 71  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120

               
Query: 131 gatg 134
           ||||
Sbjct: 121 gatg 124




>51770_ptc-miR475a:pmrd
          Length = 124

 Score =  246 bits (124), Expect = 4e-66
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60

                                                                       
Query: 71  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120

               
Query: 131 gatg 134
           ||||
Sbjct: 121 gatg 124




>53811_ptc-miRf11989-akr:pmrd
          Length = 128

 Score =  167 bits (84), Expect = 3e-42
 Identities = 117/127 (92%), Gaps = 2/127 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 60

                                                                       
Query: 68  tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 127
           |||| ||||||| ||  ||  || ||||| || ||||||| |||||||||||||||||||
Sbjct: 61  tgctgaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgat 118

                  
Query: 128 taagatg 134
           |||||||
Sbjct: 119 taagatg 125




>52353_ptc-miRf10531-akr:pmrd
          Length = 128

 Score =  167 bits (84), Expect = 3e-42
 Identities = 117/127 (92%), Gaps = 2/127 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 60

                                                                       
Query: 68  tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 127
           |||| ||||||| ||  ||  || ||||| || ||||||| |||||||||||||||||||
Sbjct: 61  tgctgaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgat 118

                  
Query: 128 taagatg 134
           |||||||
Sbjct: 119 taagatg 125




>51771_ptc-miR475b:pmrd
          Length = 120

 Score =  157 bits (79), Expect = 3e-39
 Identities = 112/122 (91%), Gaps = 2/122 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 60

                                                                       
Query: 72  aaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 131
            ||||||| ||  ||  || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 61  gaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 118

             
Query: 132 at 133
           ||
Sbjct: 119 at 120




>51773_ptc-miR475d:pmrd
          Length = 103

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                             
Query: 7  ataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaa 57
          |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ataacatcctgatcaatggccattgtaagagtagaaggatccatgaagcaa 51



 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 84  aaaacattgactcctggtatttcactcttacagtgcccattgattaagatg 134
           |||||||||||||||| |||| ||||||||||| | |||||||||||||||
Sbjct: 50  aaaacattgactcctgatattccactcttacagagtccattgattaagatg 100




>53810_ptc-miRf11988-akr:pmrd
          Length = 102

 Score = 91.7 bits (46), Expect = 1e-19
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                            
Query: 8  taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaa 57
          ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taacatcctgatcaatggccattgtaagagtagaaggatccatgaagcaa 50



 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 84  aaaacattgactcctggtatttcactcttacagtgcccattgattaagatg 134
           |||||||||||||||| |||| ||||||||||| | |||||||||||||||
Sbjct: 49  aaaacattgactcctgatattccactcttacagagtccattgattaagatg 99




>51772_ptc-miR475c:pmrd
          Length = 125

 Score = 85.7 bits (43), Expect = 8e-18
 Identities = 106/125 (84%), Gaps = 4/125 (3%)
 Strand = Plus / Plus

                                                                       
Query: 8   taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 67
           ||||||||||| |||||||||||||||||||| |  | |||||||  |||||||||||||
Sbjct: 1   taacatcttgaacaatggccattgtaagagta-agtggtccatgagtcaataactctctt 59

                                                                       
Query: 68  tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 127
           |||  |||||  ||| ||| ||||||||||   |||||||| |||||| || ||||||||
Sbjct: 60  tgcagaaatgcatgacaaagcattgactcc---tatttcacccttacaatgtccattgat 116

                
Query: 128 taaga 132
           |||||
Sbjct: 117 taaga 121