miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53493_ptc-miRf11671-akr:pmrd
Length = 140
Score = 81.8 bits (41), Expect = 5e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgaccgaattacaca 60
||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 30 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgaccgagctacaca 89
Query: 61 c 61
|
Sbjct: 90 c 90
>53204_ptc-miRf11382-akr:pmrd
Length = 138
Score = 81.8 bits (41), Expect = 5e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgaccgaattacaca 60
||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 28 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgaccgagctacaca 87
Query: 61 c 61
|
Sbjct: 88 c 88
>52995_ptc-miRf11173-akr:pmrd
Length = 138
Score = 79.8 bits (40), Expect = 2e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgaccga 52
||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 28 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgaccga 79
>53358_ptc-miRf11536-akr:pmrd
Length = 138
Score = 75.8 bits (38), Expect = 3e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgacc 50
||||||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 89 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgacc 138
Score = 63.9 bits (32), Expect = 1e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggttgaccga 52
|||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 ggttaaagggaatcgccagatgggatttcaggttgaccga 40
>52094_ptc-miRf10272-akr:pmrd
Length = 140
Score = 75.8 bits (38), Expect = 3e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgacc 50
||||||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 91 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgacc 140
Score = 58.0 bits (29), Expect = 7e-10
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggttgaccgaattac 57
|||||||||||||| ||| ||||||||||||||| ||||| ||||
Sbjct: 1 ggttaaagggaatcgccagatgggatttcaggttaaccgagttac 45
>51982_ptc-miRf10160-akr:pmrd
Length = 140
Score = 75.8 bits (38), Expect = 3e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1 tcatgtaactttggttaaagggaatctccatatgggatttcaggttgacc 50
||||||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 91 tcatgtagctttggttaaagggaatcgccagatgggatttcaggttgacc 140
Score = 58.0 bits (29), Expect = 7e-10
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggttgaccgaattac 57
|||||||||||||| ||| ||||||||||||||| ||||| ||||
Sbjct: 1 ggttaaagggaatcgccagatgggatttcaggttaaccgagttac 45
>53847_ptc-miRf12025-akr:pmrd
Length = 145
Score = 71.9 bits (36), Expect = 5e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttgaccga 52
|||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 38 ctttggttaaagggaatcgccagatgggatttcaggttgaccga 81
>52870_ptc-miRf11048-akr:pmrd
Length = 160
Score = 67.9 bits (34), Expect = 7e-13
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttgacc 50
|||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 119 ctttggttaaagggaatcaccagatgggatttcaggttgacc 160
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggt 45
|||||||||||||| ||| ||||||||||||||
Sbjct: 1 ggttaaagggaatcaccagatgggatttcaggt 33
>53376_ptc-miRf11554-akr:pmrd
Length = 145
Score = 60.0 bits (30), Expect = 2e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttgacc 50
|||||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 104 ctttggttaaagggaatcgccagatgggattccaggttgacc 145
Score = 56.0 bits (28), Expect = 3e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggttgaccga 52
|||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 1 ggttaaagggaatcgccaaatgggattccaggttgaccga 40
>53286_ptc-miRf11464-akr:pmrd
Length = 167
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttgaccgaattaca 58
|||||||||||||||||| ||| |||||||| |||||||||||| ||||
Sbjct: 60 ctttggttaaagggaatcgccagatgggattcgaggttgaccgaactaca 109
>52661_ptc-miRf10839-akr:pmrd
Length = 138
Score = 56.0 bits (28), Expect = 3e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttga 48
|||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 36 ctttggctaaagggaatcgccagatgggatttcaggttga 75
>53608_ptc-miRf11786-akr:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 4e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggt 45
||||||||||||||| ||| ||||||||||||||
Sbjct: 1 tggttaaagggaatcgccagatgggatttcaggt 34
Score = 52.0 bits (26), Expect = 4e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttcaggttgacc 50
||||||||||| |||||| ||| ||||| |||||||||||||
Sbjct: 98 ctttggttaaaaggaatcgccaaatggggtttcaggttgacc 139
>53205_ptc-miRf11383-akr:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttc 41
|||||||||||||||||| ||| ||||||||||
Sbjct: 91 ctttggttaaagggaatcgccagatgggatttc 123
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 23 aatctccatatgggatttcaggttgacc 50
|||| ||| |||||||||||||||||||
Sbjct: 3 aatcgccagatgggatttcaggttgacc 30
>52384_ptc-miRf10562-akr:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 7e-07
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 13 ggttaaagggaatctccatatgggatttcaggttgaccga 52
|||||||||| ||| ||||||||||| |||| ||||||||
Sbjct: 1 ggttaaaggggatcaccatatgggatctcagattgaccga 40
>53957_ptc-miRf12135-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 4e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctccatatgggatttc 41
||||||||||||| |||| ||| ||||||||||
Sbjct: 88 ctttggttaaaggaaatcgccagatgggatttc 120
>53157_ptc-miRf11335-akr:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 4e-05
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 9 ctttggttaaagggaatctc-catatgggatttcaggttgaccga 52
|||||||||||||||||| | | |||||||| ||||||||||||
Sbjct: 65 ctttggttaaagggaatcgcttagatgggattccaggttgaccga 109
>54294_ptc-miRf12472-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 ggaatctccatatgggatttcaggttgaccga 52
|||||| ||| ||| |||||||||||||||||
Sbjct: 1 ggaatcaccagatgagatttcaggttgaccga 32
>54256_ptc-miRf12434-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>54255_ptc-miRf12433-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
>54254_ptc-miRf12432-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>54245_ptc-miRf12423-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53941_ptc-miRf12119-akr:pmrd
Length = 165
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 127 tggttaaaggggatcgccagatgggatctcaggtt 161
>53940_ptc-miRf12118-akr:pmrd
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 5 tggttaaaggggatcgccagatgggatctcaggtt 39
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 68 tggttaaaggggatcgccagatgggatctcaggtt 102
>53568_ptc-miRf11746-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
>53567_ptc-miRf11745-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
>53543_ptc-miRf11721-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53542_ptc-miRf11720-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53541_ptc-miRf11719-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53472_ptc-miRf11650-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53471_ptc-miRf11649-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
>53470_ptc-miRf11648-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 64 tggttaaaggggatcgccagatgggatctcaggtt 98
>53466_ptc-miRf11644-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53465_ptc-miRf11643-akr:pmrd
Length = 114
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 7 tggttaaaggggatcgccagatgggatctcaggtt 41
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 70 tggttaaaggggatcgccagatgggatctcaggtt 104
>53429_ptc-miRf11607-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53427_ptc-miRf11605-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53426_ptc-miRf11604-akr:pmrd
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 5 tggttaaaggggatcgccagatgggatctcaggtt 39
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 68 tggttaaaggggatcgccagatgggatctcaggtt 102
>53315_ptc-miRf11493-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>53308_ptc-miRf11486-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>52551_ptc-miRf10729-akr:pmrd
Length = 100
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 62 tggttaaaggggatcgccagatgggatctcaggtt 96
>52438_ptc-miRf10616-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>52231_ptc-miRf10409-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>52224_ptc-miRf10402-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>52171_ptc-miRf10349-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
>52032_ptc-miRf10210-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 12 tggttaaagggaatctccatatgggatttcaggtt 46
||||||||||| ||| ||| ||||||| |||||||
Sbjct: 63 tggttaaaggggatcgccagatgggatctcaggtt 97
