miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54913_zma-miR156c:pmrd
          Length = 139

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  gaaagctgacagaagagagtgagca 30
          |||||||||||||||||||||||||
Sbjct: 15 gaaagctgacagaagagagtgagca 39




>54769_vvi-miR156d:pmrd
          Length = 103

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 ctgacagaagagagtgagcatatgcaagcaatt 43
          |||||||||||||||||||| ||||| ||||||
Sbjct: 10 ctgacagaagagagtgagcacatgcaggcaatt 42




>48243_ath-miRf11143-akr:pmrd
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 5  agaaagctgacagaagagagtgagcatatgca 36
          ||||| |||||||||||||||||||| |||||
Sbjct: 97 agaaaactgacagaagagagtgagcacatgca 66




>46911_ath-miR156b:pmrd
          Length = 183

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 5  agaaagctgacagaagagagtgagcatatgca 36
          ||||| |||||||||||||||||||| |||||
Sbjct: 40 agaaaactgacagaagagagtgagcacatgca 71




>54916_zma-miR156f:pmrd
          Length = 167

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 82  gtgctcacttctcttgctgtcagctc 107
           ||||||||||||||| ||||||||||
Sbjct: 129 gtgctcacttctctttctgtcagctc 154



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gctgacagaagagagtgagca 30
          |||||||||||||||||||||
Sbjct: 19 gctgacagaagagagtgagca 39




>54398_sbi-miR156f:pmrd
          Length = 128

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 82  gtgctcacttctcttgctgtcagctc 107
           ||||||||||||||| ||||||||||
Sbjct: 103 gtgctcacttctctttctgtcagctc 128



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gctgacagaagagagtgagca 30
          |||||||||||||||||||||
Sbjct: 1  gctgacagaagagagtgagca 21




>48528_gma-miR156a:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 10 gctgacagaagagagtgagcatatgc 35
          ||||||||||||||||||||| ||||
Sbjct: 19 gctgacagaagagagtgagcacatgc 44




>54917_zma-miR156g:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gctgacagaagagagtgagca 30
          |||||||||||||||||||||
Sbjct: 2  gctgacagaagagagtgagca 22



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 82  gtgctcacttctcttgctgtcagct 106
           ||||||||||||||| |||||||||
Sbjct: 97  gtgctcacttctctttctgtcagct 121




>54767_vvi-miR156b:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  gaaagctgacagaagagagtgagca 30
          |||| ||||||||||||||||||||
Sbjct: 5  gaaaactgacagaagagagtgagca 29




>51591_ptc-miR156a:pmrd
          Length = 101

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                       
Query: 3  aaagaaag-ctgacagaagagagtgagca 30
          |||||||| ||||||||||||||||||||
Sbjct: 1  aaagaaagactgacagaagagagtgagca 29




>48812_osa-miR156l:pmrd
          Length = 156

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 gacagaagagagtgagcatat 33
          |||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcatat 32



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 81  tgtgctcacttctcttgctgtcagc 105
           |||||||||||||||| ||||||||
Sbjct: 124 tgtgctcacttctctttctgtcagc 148




>48807_osa-miR156g:pmrd
          Length = 116

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gctgacagaagagagtgagca 30
          |||||||||||||||||||||
Sbjct: 2  gctgacagaagagagtgagca 22




>48806_osa-miR156f:pmrd
          Length = 186

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 82  gtgctcacttctcttgctgtcagct 106
           ||||||||||||||| |||||||||
Sbjct: 162 gtgctcacttctctttctgtcagct 186




>48803_osa-miR156c:pmrd
          Length = 149

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gctgacagaagagagtgagca 30
          |||||||||||||||||||||
Sbjct: 27 gctgacagaagagagtgagca 47




>48425_cpt-miR156a:pmrd
          Length = 101

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 11 ctgacagaagagagtgagcatatgcaagcaattgtat 47
          |||||||||||||||||||| | ||| | ||||||||
Sbjct: 10 ctgacagaagagagtgagcacacgcaggtaattgtat 46




>54914_zma-miR156d:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 82  gtgctcacttctcttgctgtcagc 105
           ||||||||||||||| ||||||||
Sbjct: 78  gtgctcacttctctttctgtcagc 101




>54911_zma-miR156a:pmrd
          Length = 152

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 17 ctgacagaagagagtgagca 36




>54401_sbi-miR156i:pmrd
          Length = 121

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 2  ctgacagaagagagtgagca 21




>51926_ptc-miRf10104-akr:pmrd
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 7  ctgacagaagagagtgagca 26




>51596_ptc-miR156f:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagca 29




>51593_ptc-miR156c:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagca 29




>51354_ppr-miR156:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagca 20




>49442_osa-miRf10227-akr:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 90 ctgacagaagagagtgagca 71




>48815_osa-miR156o:pmrd
          Length = 179

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  tgacagaagagagtgagcat 31
           ||||||||||||||||||||
Sbjct: 160 tgacagaagagagtgagcat 179




>48802_osa-miR156b:pmrd
          Length = 176

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 42 ctgacagaagagagtgagca 61




>48795_oru-miR156:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagca 20




>48491_ghr-miR156d:pmrd
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 79  cgtgtgctcacttctcttgctgtcagct 106
           |||||||||||||||||| |||||||||
Sbjct: 68  cgtgtgctcacttctctt-ctgtcagct 94




>46912_ath-miR156c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 11 ctgacagaagagagtgagca 30




>46910_ath-miR156a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 ctgacagaagagagtgagca 30
          ||||||||||||||||||||
Sbjct: 20 ctgacagaagagagtgagca 39