miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>47009_ath-miR396b:pmrd
          Length = 135

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 73  tggaagctcaagaaagctgtgggaaaacatg 103
           |||||||||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 1  gtcatgctattccacagctttcttgaactttctt 34
          ||||| || |||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaactttctt 35




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 71  catggaagctcaagaaagctgtgggaaaacatgg 104
           |||||||||||||||||||||||||| |||||||
Sbjct: 112 catggaagctcaagaaagctgtgggagaacatgg 145



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 71  catggaagctcaagaaagctgtgggaaaacatg 103
           |||||||||||||||||||||||||| ||||||
Sbjct: 33  catggaagctcaagaaagctgtgggagaacatg 1



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 3   catgctattccacagctttcttgaactt 30
           |||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 71  catggaagctcaagaaagctgtgggaaaacatg 103
           |||||||||||||||||||||||||| ||||||
Sbjct: 33  catggaagctcaagaaagctgtgggagaacatg 1



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 3   catgctattccacagctttcttgaactt 30
           |||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  gtcatgctattccacagctttcttgaactttcttg 35
          |||||||| ||||||||||||||||||||| ||||
Sbjct: 2  gtcatgcttttccacagctttcttgaacttccttg 36



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 71  catggaagctcaagaaagctgtgggaaaacatgg 104
           ||||||||||||||||||| |||||| |||||||
Sbjct: 121 catggaagctcaagaaagccgtgggagaacatgg 154




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          ||||||||||||||| ||||||||||||||
Sbjct: 1  gtcatgctattccacggctttcttgaactt 30



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 74  ggaagctcaagaaagctgtgggaaaacatgg 104
           ||||| ||||||||||||||| |||||||||
Sbjct: 71  ggaagttcaagaaagctgtggaaaaacatgg 101



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaactt 73




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaactt 41



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  gaagctcaagaaagctgtggga 96
           ||||||||||||||||||||||
Sbjct: 86  gaagctcaagaaagctgtggga 107




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 1  gtcatgctattccacagctttcttgaact 29
          |||||||| ||||||||||||||||||||
Sbjct: 5  gtcatgcttttccacagctttcttgaact 33



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  gaagctcaagaaagctgtggga 96
           ||||||||||||||||||||||
Sbjct: 84  gaagctcaagaaagctgtggga 105




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 2   tcatgctattccacagctttcttgaactt 30
           |||||||||||||| ||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaactt 74



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 74  ggaagctcaagaaagctgtgggaaaacatgg 104
           ||||| ||||||||||||||| |||||||||
Sbjct: 33  ggaagttcaagaaagctgtggaaaaacatgg 3



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ttccacagctttcttgaactttctt 34
          |||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactttctt 25




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 3  catgctattccacagctttcttgaactt 30
          |||||| |||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaactt 34



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 75  gaagctcaagaaagctgtgggaaaacatgg 104
           |||| ||||||||||||||||||| |||||
Sbjct: 76  gaagttcaagaaagctgtgggaaaccatgg 105




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 71  catggaagctcaagaaagctgtgggaaaacat 102
           ||||||||||||||||||| |||||| |||||
Sbjct: 32  catggaagctcaagaaagccgtgggagaacat 1



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 4   atgctattccacagctttcttgaactttcttg 35
           ||||| ||||||||||||||||||||| ||||
Sbjct: 148 atgcttttccacagctttcttgaacttccttg 117




>51564_pta-miR396:pmrd
          Length = 119

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  gtcatgctattccacagctttcttgaacttt 31
          ||||| || ||||||||||||||||||||||
Sbjct: 8  gtcatacttttccacagctttcttgaacttt 38




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 4  atgctattccacagctttcttgaactt 30
          ||||| |||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 5  tgctattccacagctttcttgaactt 30
          |||| |||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaactt 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 gaagctcaagaaagctgtggga 96
          ||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtggga 88




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttccacagctttcttgaacttt 31
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaactt 23




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaactt 23




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttccacagctttcttgaactt 30
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54584_smo-miR396:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  gaagctcaagaaagctgtgggaaa 98
           |||| |||||||||||||||||||
Sbjct: 134 gaagttcaagaaagctgtgggaaa 157




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 3  catgctattccacagctttcttgaactt 30
          |||||| |||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 76  aagctcaagaaagctgtgggaaaa 99
           |||||||||||||| |||||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaa 160




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 3  catgctattccacagctttcttgaactt 30
          |||||| |||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 76  aagctcaagaaagctgtgggaaaa 99
           |||||||||||||| |||||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaa 163




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ttccacagctttcttgaact 29
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 ttccacagctttcttgaact 29
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20