miRNEST 2.0, an integrative microRNA resource :: BLAST
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 79.8 bits (40), Expect = 6e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 102 gatttgcggttcaataaagctgtgggaagatacagacagggtca 145
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 122 gatttgcggttcaataaagctgtgggaagatacagacagagtca 165
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 ccctctttgtattcttccacagctttcttgaactgca 51
|||||| ||||||||||||||||||||||||||||||
Sbjct: 4 ccctctctgtattcttccacagctttcttgaactgca 40
>48578_gma-miR396a:pmrd
Length = 140
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 11 atggccctctttgtattcttccacagctttcttgaactgcatc 53
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3 atggctctctttgtattcttccacagctttcttgaactgcatc 45
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 104 tttgcggttcaataaagctgtgggaagatacagacagggtca 145
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 97 tttgcggttcaataaagctgtgggaagatacagatagggtca 138
>48680_lja-miR396:pmrd
Length = 108
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 16 cctctttgtattcttccacagctttcttgaactgcat 52
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctctttgtattcttccacagctttcttgaactgcat 39
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 104 tttgcggttcaataaagctgtgggaagatacagacaggg 142
|||||||||||||||||||||||||||||| ||| ||||
Sbjct: 70 tttgcggttcaataaagctgtgggaagatatagataggg 108
>47008_ath-miR396a:pmrd
Length = 151
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 102 gatttgcggttcaataaagctgtgggaagatacagac 138
|||||||||||||||||||||||||||||||||||||
Sbjct: 115 gatttgcggttcaataaagctgtgggaagatacagac 151
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 22 tgtattcttccacagctttcttgaactgca 51
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>51735_ptc-miR396b:pmrd
Length = 132
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 19 ctttgtattcttccacagctttcttgaactgcatctcttagatt 62
||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcacctattagatt 44
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 106 tgcggttcaataaagctgtgggaagataca 135
||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131
>55073_zma-miR396b:pmrd
Length = 136
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 11 atggccctctttgtattcttccacagctttcttgaactgcatctct 56
|||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcatctct 48
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54871_vvi-miR396d:pmrd
Length = 120
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 19 ctttgtattcttccacagctttcttgaactgcat 52
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 105 ttgcggttcaataaagctgtgggaagatac 134
||||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>54645_sof-miR396:pmrd
Length = 134
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 11 atggccctctttgtattcttccacagctttcttgaactgcatctct 56
|||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcatctct 48
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 11 atggccctctttgtattcttccacagctttcttgaactgcatctct 56
|||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcatctct 48
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 21 ttgtattcttccacagctttcttgaactgcatctcttagatt 62
||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgcacctattagatt 42
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 106 tgcggttcaataaagctgtgggaagataca 135
||||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagataca 129
>51734_ptc-miR396a:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 105 ttgcggttcaataaagctgtgggaagataca 135
|||||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 gtattcttccacagctttcttgaactgca 51
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>55083_zma-miR396l:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcatctct 56
||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatctct 28
>48946_osa-miR396b:pmrd
Length = 116
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgcatct 54
||||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatct 36
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgcatc 53
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgcat 52
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgcat 52
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgcat 52
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>46887_aqc-miR396a:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 tttgcggttcaataaagctgtgggaa 129
||||||||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtgggaa 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactgca 51
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 gttcaataaagctgtgggaa 129
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>48486_gcl-miR396b:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 tttgcggttcaataaagctgtggga 128
|||||||||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcatc 53
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 104 tttgcggttcaataaagctgtggga 128
|||||||||||||||||||||||||
Sbjct: 25 tttgcggttcaataaagctgtggga 1
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaactgcatc 53
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48508_ghr-miR396c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 ttgcggttcaataaagctgtggga 128
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 ttgcggttcaataaagctgtggga 128
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 tcttccacagctttcttgaactg 49
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgc 50
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
