miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48697_mtr-miR156h:pmrd
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
Query: 61 attcctttgtgctctttattcttctgtcatcacc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 attcctttgtgctctttattcttctgtcatcacc 94
>48532_gma-miR156e:pmrd
Length = 124
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct: 16 tgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctc 75
Query: 61 attcctttgtgctctttattcttctgtcatca 92
| ||||||||||||| || |||||||||||||
Sbjct: 76 actcctttgtgctctctagtcttctgtcatca 107
>48537_gma-miR157c:pmrd
Length = 84
Score = 119 bits (60), Expect = 4e-28
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 6 ttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctcattcc 65
||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactcc 25
Query: 66 tttgtgctctttattcttctgtca 89
|||||||||| || ||||||||||
Sbjct: 24 tttgtgctctctagtcttctgtca 1
>51597_ptc-miR156g:pmrd
Length = 103
Score = 117 bits (59), Expect = 1e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctcatt 63
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct: 9 tgttgacagaagatagagagcacagatgatgaaatgcatggagcttaattgcatctcact 68
Query: 64 cctttgtgctctttattcttctgtcatcacc 94
|||||||||||| || |||||||||||||||
Sbjct: 69 cctttgtgctctctagtcttctgtcatcacc 99
>51598_ptc-miR156h:pmrd
Length = 103
Score = 107 bits (54), Expect = 1e-24
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
|||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||
Sbjct: 6 tgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctc 65
Query: 61 attcctttgtgctctttattcttctgtcatcacc 94
| ||||||||||||| || |||||||||||||||
Sbjct: 66 actcctttgtgctctctagtcttctgtcatcacc 99
>54774_vvi-miR156i:pmrd
Length = 103
Score = 105 bits (53), Expect = 6e-24
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctcatt 63
|||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct: 9 tgttgacagaagatagagagcacagatgatgaaatgcaagg-agcca---gcatctcact 64
Query: 64 cctttgtgctctttattcttctgtcatcacc 94
|||||||||||| ||||||||||||||||||
Sbjct: 65 cctttgtgctctctattcttctgtcatcacc 95
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 5 gttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctcattc 64
|||||||||||||||||||||| || ||||||||||||||| ||| |||||||| ||
Sbjct: 1 gttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactc 60
Query: 65 ctttgtgctctttattcttctgtcatc 91
||||||||||| || ||||||||||||
Sbjct: 61 ctttgtgctctctagtcttctgtcatc 87
>46862_aqc-miR156b:pmrd
Length = 83
Score = 79.8 bits (40), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcacagatgatgaaatgcatgga-aggcaatggcatctcattcc 65
||||||||||||||||||||||||||||| ||||||||| || | |||||||| |||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgcatggagagtc---tgcatctcactcc 57
Query: 66 tttgtgctctttattcttctgtcatc 91
|||||||||| ||| |||||||||||
Sbjct: 58 tttgtgctctctatgcttctgtcatc 83
>54772_vvi-miR156g:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 78/91 (85%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctcatt 63
|||||||||||||||||||||||||||||||| |||||||| | |||||||| |
Sbjct: 9 tgttgacagaagatagagagcacagatgatgatgtgcatgga----gtttgcatctcact 64
Query: 64 cctttgtgctctttattcttctgtcatcacc 94
|||||||||||| || ||||||||||||||
Sbjct: 65 cctttgtgctctctagacttctgtcatcacc 95
>48695_mtr-miR156e:pmrd
Length = 172
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgcat 42
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatgatatgcat 42
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
|||| ||| ||||||||||||| ||| ||||||||||||||
Sbjct: 132 gcatatcactcctttgtgctctctatgcttctgtcatcacc 172
>48531_gma-miR156d:pmrd
Length = 151
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgcat 42
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 19 tgttgacagaagatagagagcacagatgatgatatgcat 57
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
|||||| | ||||||||||||| ||| ||||||||||||||
Sbjct: 96 gcatcttactcctttgtgctctctatacttctgtcatcacc 136
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgca 41
|||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgca 38
>51600_ptc-miR156j:pmrd
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatgaaatgca 41
|||||||||||||||||||||||||||||||| |||||
Sbjct: 9 tgttgacagaagatagagagcacagatgatgatatgca 46
>46924_ath-miR157a:pmrd
Length = 98
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatga 35
||||||||||||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcacagatgatga 33
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
|||||| | ||||||||||||| || ||||||||||||||
Sbjct: 58 gcatcttactcctttgtgctctctagccttctgtcatcacc 98
>51599_ptc-miR156i:pmrd
Length = 99
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatg 34
|||||||||||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcacagatgatg 39
>48631_gra-miR157b:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatg 34
|||||||||||||||||||||||||||||||
Sbjct: 3 tgttgacagaagatagagagcacagatgatg 33
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatca 92
||||| || ||||||||||||| ||| ||||||||||||
Sbjct: 51 gcatcccactcctttgtgctctctatgcttctgtcatca 89
>48630_gra-miR157a:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgatg 34
|||||||||||||||||||||||||||||||
Sbjct: 3 tgttgacagaagatagagagcacagatgatg 33
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 61 gcatcccactcctttgtgctctttatgcttctgtcatcacc 101
>46861_aqc-miR156a:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcacagatgatgaaatgcatgga 45
|||||||||||||||||||||||||| ||| ||||||||
Sbjct: 1 tgacagaagatagagagcacagatgacgaattgcatgga 39
>48790_nta-miR157:pmrd
Length = 131
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcacagatgatga 35
||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatga 30
>46925_ath-miR157b:pmrd
Length = 132
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcacagatgat 33
||||||||||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcacagatgat 46
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
|||||| | ||||||||||||| || ||||||||||||||
Sbjct: 73 gcatcttactcctttgtgctctctagccttctgtcatcacc 113
>54771_vvi-miR156f:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ctgttgacagaagatagagagcaca 27
|||||||||||||||||||||||||
Sbjct: 8 ctgttgacagaagatagagagcaca 32
>54570_smo-miR156b:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgctgttgacagaagatagagagcacaga 29
||||| |||||||||||||||||||||||
Sbjct: 6 tgctgctgacagaagatagagagcacaga 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 gtgctctttattcttctgtcatca 92
||||||| ||||||||||||||||
Sbjct: 80 gtgctctctattcttctgtcatca 103
>48696_mtr-miR156f:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>48642_han-miR157a:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcacaga 29
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacaga 24
>48530_gma-miR156c:pmrd
Length = 185
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcaca 167
>54661_stu-miR157a:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcacagatgatgaaatgc 40
||||||||||||||||||||| ||||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54532_sly-miR156a:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcacagatgatgaaatgc 40
||||||||||||||||||||| ||||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>48393_bra-miR157a:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 12 tgttgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 16 tgttgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 23 tgttgacagaagatagagagcac 45
>46926_ath-miR157c:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 22 tgttgacagaagatagagagcac 44
>48675_lja-miR157a:pmrd
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcaca 27
||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcaca 22
>46927_ath-miR157d:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 61 attcctttgtgctctttattcttctgtcatcacc 94
|||||| |||||||| ||| ||||||||||||||
Sbjct: 165 attcctatgtgctctctatgcttctgtcatcacc 198
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcac 26
||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcaca 27
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcaca 27
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48529_gma-miR156b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||| ||||||||||
Sbjct: 18 tgttgacagaagagagagagcaca 41
>48305_bdi-miR156:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 gttgacagaagatagagagcacag 28
|||||||||||| |||||||||||
Sbjct: 99 gttgacagaagagagagagcacag 122
>46917_ath-miR156h:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagaaagagagcaca 32
>46903_aqc-miR529:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||| ||||||||||
Sbjct: 15 tgttgacagaagagagagagcaca 38
>46857_ahy-miR157k:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcaca 27
||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagagagagagcaca 42
