miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48707_mtr-miR162d:pmrd
          Length = 87

 Score =  172 bits (87), Expect = 4e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 60

                                      
Query: 81  aatcggtcgataaacctctgcatccag 107
           |||||||||||||||||||||||||||
Sbjct: 61  aatcggtcgataaacctctgcatccag 87




>48706_mtr-miR162c:pmrd
          Length = 86

 Score =  170 bits (86), Expect = 2e-43
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 27

                                     
Query: 81  aatcggtcgataaacctctgcatcca 106
           ||||||||||||||||||||||||||
Sbjct: 26  aatcggtcgataaacctctgcatcca 1




>48705_mtr-miR162b:pmrd
          Length = 85

 Score =  168 bits (85), Expect = 6e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                       
Query: 22  tggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatga 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatga 60

                                    
Query: 82  atcggtcgataaacctctgcatcca 106
           |||||||||||||||||||||||||
Sbjct: 61  atcggtcgataaacctctgcatcca 85




>48545_gma-miR162a:pmrd
          Length = 102

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 86/100 (86%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 17  gtcactggatgcagcggttcatcgatctgttcctgaatt-ttgtttgtctcgtaaaacaa 75
           |||||||||||||||||||||||||||| |||||||||  ||||||  |    |  | ||
Sbjct: 6   gtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaac----atcagaa 61

                                                   
Query: 76  acatgaatcggtcgataaacctctgcatccagcgctcact 115
            ||||||||| |||||||||||||||||||||||||||||
Sbjct: 62  ccatgaatcgatcgataaacctctgcatccagcgctcact 101




>54784_vvi-miR162:pmrd
          Length = 103

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 17 gtcactggatgcagcggttcatcgatctgttcctgaa 53
          |||||||||||||||||||||||||||| ||||||||
Sbjct: 5  gtcactggatgcagcggttcatcgatctcttcctgaa 41



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 80  gaatcggtcgataaacctctgcatccagcgctcact 115
           |||||||||||||||||||||||||||||| |||||
Sbjct: 66  gaatcggtcgataaacctctgcatccagcgttcact 101




>52400_ptc-miRf10578-akr:pmrd
          Length = 103

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 81/96 (84%), Gaps = 5/96 (5%)
 Strand = Plus / Minus

                                                                       
Query: 19  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75
           ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 97  cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 40

                                               
Query: 76  acatgaatcggtcgataaacctctgcatccagcgct 111
           ||||||| || |||||||||||||||||||||||||
Sbjct: 39  acatgaaccgatcgataaacctctgcatccagcgct 4




>52399_ptc-miRf10577-akr:pmrd
          Length = 103

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 81/96 (84%), Gaps = 5/96 (5%)
 Strand = Plus / Minus

                                                                       
Query: 19  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75
           ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 97  cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 40

                                               
Query: 76  acatgaatcggtcgataaacctctgcatccagcgct 111
           ||||||| || |||||||||||||||||||||||||
Sbjct: 39  acatgaaccgatcgataaacctctgcatccagcgct 4




>51616_ptc-miR162a:pmrd
          Length = 107

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 81/96 (84%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                       
Query: 19  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75
           ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 9   cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66

                                               
Query: 76  acatgaatcggtcgataaacctctgcatccagcgct 111
           ||||||| || |||||||||||||||||||||||||
Sbjct: 67  acatgaaccgatcgataaacctctgcatccagcgct 102




>48546_gma-miR162m:pmrd
          Length = 367

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 87  tcgataaacctctgcatccagcgctcacttt 117
           |||||||||||||||||||||||||||||||
Sbjct: 1   tcgataaacctctgcatccagcgctcacttt 31




>48493_ghr-miR162a:pmrd
          Length = 148

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 76  acatgaatcggtcgataaacctctgcatccagcgc 110
           |||||||||| ||||||||||||||||||||||||
Sbjct: 83  acatgaatcgatcgataaacctctgcatccagcgc 117




>48423_cpa-miR162a:pmrd
          Length = 109

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 75  aacatgaatcggtcgataaacctctgcatccagcg 109
           ||||||||||| |||||||||||||||||||||||
Sbjct: 68  aacatgaatcgatcgataaacctctgcatccagcg 102



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 17 gtcactggatgcagcggttcatcgatctgttcctg 51
          ||||||||| |||||||||||||||||| ||||||
Sbjct: 9  gtcactggaggcagcggttcatcgatctcttcctg 43




>54948_zma-miR162b:pmrd
          Length = 130

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 80  gaatcggtcgataaacctctgcatccag 107
           ||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>54542_sly-miR162:pmrd
          Length = 99

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 80  gaatcggtcgataaacctctgcatccag 107
           ||||||||||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99




>54387_rco-miR162:pmrd
          Length = 96

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 77  catgaatcggtcgataaacctctgcatccagc 108
           ||||||||| ||||||||||||||||||||||
Sbjct: 65  catgaatcgatcgataaacctctgcatccagc 96



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 19 cactggatgcagcggttcatcgatctgttcctg 51
          ||||||| |||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33




>48685_lsa-miR162:pmrd
          Length = 89

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 87  tcgataaacctctgcatccagcgctcac 114
           ||||||||||||||||||||||||||||
Sbjct: 1   tcgataaacctctgcatccagcgctcac 28




>47354_ath-miRf10254-akr:pmrd
          Length = 115

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 80  gaatcggtcgataaacctctgcatccagcgct 111
           |||||| |||||||||||||||||||||||||
Sbjct: 42  gaatcgatcgataaacctctgcatccagcgct 11




>46938_ath-miR162b:pmrd
          Length = 111

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  gaatcggtcgataaacctctgcatccagcgct 111
           |||||| |||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103




>52498_ptc-miRf10676-akr:pmrd
          Length = 101

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctgaa 62




>52497_ptc-miRf10675-akr:pmrd
          Length = 105

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctgaa 64




>52244_ptc-miRf10422-akr:pmrd
          Length = 105

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctgaa 64




>52243_ptc-miRf10421-akr:pmrd
          Length = 101

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctgaa 62




>51618_ptc-miR162c:pmrd
          Length = 107

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 9  cactggaggcagcggttcatcgatcttttcctgaa 43




>51617_ptc-miR162b:pmrd
          Length = 107

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 9  cactggaggcagcggttcatcgatcttttcctgaa 43




>48690_mdo-miR162:pmrd
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 77  catgaatcggtcgataaacctctgcatccag 107
           ||||||||||||||||||||| |||||||||
Sbjct: 58  catgaatcggtcgataaacctttgcatccag 88




>48682_llu-miR162:pmrd
          Length = 80

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 77  catgaatcggtcgataaacctctgcatccag 107
           ||||||||| |||||||||||||||||||||
Sbjct: 50  catgaatcgatcgataaacctctgcatccag 80



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 21 ctggatgcagcggttcatcgatctgttcctgaattt 56
          ||||| ||||||||| |||||||| |||||||||||
Sbjct: 1  ctggaagcagcggtttatcgatctcttcctgaattt 36




>46937_ath-miR162a:pmrd
          Length = 140

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 77  catgaatcggtcgataaacctctgcatccagcg 109
           ||||||| | |||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 21 ctggatgcagcggttcatcgatctgttcctg 51
          ||||| |||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55




>48834_osa-miR162a:pmrd
          Length = 171

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 80  gaatcggtcgataaacctctgcatccag 107
           |||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>48835_osa-miR162b:pmrd
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 80  gaatcggtcgataaacctctgcatccagcgctcacttt 117
           |||||| ||||||| |||||||||||||  ||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccagatctcacttt 134




>48836_osa-miR162m:pmrd
          Length = 114

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 80  gaatcggtcgataaacctctgcatccag 107
           |||||| ||||||| |||||||||||||
Sbjct: 87  gaatcgatcgataagcctctgcatccag 114